Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-109   ILE-110  9.8 9.7 -58.2 42.4 76.7 72.5 65.9
 ILE-110   SER-111  6.9 6.6 -5.5 -4.1 28.7 35.3 129.2
 SER-111   ILE-112  6.4 6.6 11.7 -10.1 103.0 105.0 8.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-116   GLY-117  7.0 6.1 -11.8 27.4 112.8 114.7 87.8
 GLY-117   THR-118  10.4 9.5 -37.8 23.3 55.3 61.5 13.0
 THR-118   PRO-119  12.7 12.0 -15.5 6.3 70.9 75.8 5.6
 PRO-119   ILE-120  15.5 14.9 3.7 4.2 144.6 154.8 -65.1
 ILE-120   ASP-121  13.3 13.3 6.8 -1.0 83.9 87.5 -42.9
 ASP-121   SER-122  13.2 13.3 -3.6 1.3 30.8 26.5 44.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-190   SER-191  5.0 5.2 15.7 0.6 18.1 16.4 204.1
 SER-191   THR-192  6.8 7.2 -5.6 12.5 121.2 116.3 77.0
 THR-192   SER-193  8.7 8.8 -3.6 -4.4 109.1 111.9 -108.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-195   TYR-196  6.6 7.1 -11.2 5.4 67.7 70.9 43.8
 TYR-196   VAL-197  8.0 8.2 1.8 -4.8 118.4 118.5 53.5
 VAL-197   THR-198  5.5 5.5 -5.9 -7.3 30.0 26.8 159.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-205   GLN-206  3.1 3.2 -0.8 20.0 18.8 22.7 -240.5
 GLN-206   ILE-207  5.1 5.4 21.7 -10.3 87.4 84.4 115.0
 ILE-207   GLY-208  8.1 8.3 -13.6 -18.0 41.8 47.9 345.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees