Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-106   MET-107  4.9 4.9 2.3 0.6 96.3 98.9 9.0
 MET-107   SER-108  3.0 3.2 1.3 -11.5 169.9 170.4 185.0
 SER-108   LEU-109  4.5 4.7 -14.4 12.4 75.0 73.3 -28.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-217   LYS-218  5.1 4.9 20.6 -26.0 102.3 103.1 26.1
 LYS-218   GLY-219  2.8 3.0 -1.5 1.0 4.9 4.2 9.8
 GLY-219   TYR-220  2.8 3.0 -0.2 -0.6 71.9 70.4 17.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-249   LEU-250  7.2 7.2 5.4 -1.6 95.1 96.7 25.4
 LEU-250   LYS-251  4.0 4.1 1.0 -4.6 134.9 131.7 8.8
 LYS-251   ASN-252  5.9 6.1 2.4 10.4 71.8 63.6 119.8
 ASN-252   LYS-253  9.2 9.3 -12.4 3.2 134.3 128.2 -106.5
 LYS-253   TRP-254  8.0 8.0 0.8 1.3 111.5 114.6 7.0
 TRP-254   TRP-255  8.1 8.2 2.4 -4.3 135.5 133.6 23.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-256   ASP-257  13.1 13.2 -9.6 5.7 17.2 16.5 30.2
 ASP-257   LYS-258  13.1 12.9 -11.2 6.1 83.4 83.2 77.6
 LYS-258   GLY-259  13.7 13.6 -1.4 8.3 133.1 131.2 92.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees