Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  6.8 6.5 9.2 11.4 41.0 45.7 51.8
 THR-107   LEU-108  4.8 4.0 22.6 -13.3 118.3 116.9 -24.0
 LEU-108   GLY-109  2.3 1.0 -3.8 12.8 131.2 136.6 31.5
 GLY-109   ILE-110  4.0 3.6 2.6 -10.9 121.2 115.3 10.3
 ILE-110   SER-111  7.0 6.8 0.0 -3.0 111.2 111.8 28.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-210   ILE-211  8.8 8.7 3.4 -13.0 144.6 159.3 28.5
 ILE-211   ASP-212  9.5 9.3 27.3 -13.5 140.7 131.3 -38.0
 ASP-212   SER-213  6.2 5.8 -3.4 1.0 110.9 119.4 -0.5
 SER-213   LYS-214  3.5 3.2 -18.3 16.6 74.5 72.4 28.6
 LYS-214   GLY-215  1.2 1.0 16.4 -0.8 45.6 46.7 46.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees