Sugar Abc Transporter, Periplasmic Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ILE-131   GLY-132  6.5 6.3 -3.2 12.5 141.1 139.3 26.0
 GLY-132   THR-133  4.0 3.8 -25.0 16.7 94.9 99.7 16.2
 THR-133   ASP-134  0.7 0.4 -18.0 -4.2 38.3 42.8 47.3
 ASP-134   ASN-135  2.6 2.6 20.2 -19.4 66.0 59.4 11.5
 ASN-135   TYR-136  5.4 5.4 9.8 -1.4 99.1 99.4 13.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-265   GLN-266  1.8 1.8 -6.9 19.9 144.3 150.9 29.4
 GLN-266   ARG-267  1.0 0.9 -16.8 2.8 74.4 79.3 29.1
 ARG-267   PRO-268  4.6 4.6 3.0 -3.7 70.9 64.8 6.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-308   THR-309  4.4 4.5 -5.1 12.3 156.2 148.3 18.5
 THR-309   GLY-310  5.0 5.4 -9.1 -10.3 131.8 130.5 -41.5
 GLY-310   VAL-311  4.5 5.0 37.4 -17.9 39.9 24.7 49.7
 VAL-311   ASP-312  3.8 4.7 -3.3 27.9 135.4 136.6 38.7
 ASP-312   VAL-313  5.3 6.1 9.8 -7.8 66.2 65.7 1.8
 VAL-313   VAL-314  7.3 8.1 -20.6 18.2 171.3 171.3 3.5
 VAL-314   THR-315  6.6 7.0 7.4 -12.6 62.1 57.9 12.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees