Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  5.3 5.7 -2.6 -6.3 51.3 51.7 28.3
 LEU-109   GLY-110  2.7 3.1 10.0 7.6 56.2 55.1 40.7
 GLY-110   ILE-111  3.2 3.4 -8.2 -6.9 52.6 49.0 45.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  7.5 7.7 -1.5 -5.3 41.8 37.8 38.1
 ASP-216   SER-217  5.0 5.1 -0.2 -6.6 103.6 105.5 8.1
 SER-217   LYS-218  2.2 2.1 -3.7 -12.1 84.9 70.8 37.9
 LYS-218   GLY-219  5.1 5.1 17.7 -3.2 65.5 51.6 24.3
 GLY-219   TYR-220  7.4 7.7 14.3 -8.0 67.1 69.4 10.0
 TYR-220   GLY-221  10.6 10.8 1.8 -1.8 115.4 113.7 -11.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-253   TRP-254  12.6 12.5 6.8 -8.8 113.4 111.1 -3.1
 TRP-254   TRP-255  10.0 10.0 12.6 -16.8 93.8 89.2 11.3
 TRP-255   TYR-256  6.7 6.7 -8.5 0.8 51.5 56.3 31.1
 TYR-256   ASP-257  8.5 7.9 11.3 13.9 141.3 138.7 -102.2
 ASP-257   LYS-258  11.3 11.0 -2.0 -22.2 42.9 21.9 116.0
 LYS-258   GLY-259  9.3 8.9 19.8 16.7 97.7 89.6 -3.3
 GLY-259   GLU-260  6.1 5.8 -18.6 11.7 20.5 23.5 34.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees