Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  3.3 3.4 10.5 -11.8 46.8 47.0 -16.5
 LEU-109   GLY-110  1.5 0.7 8.2 -34.5 122.4 121.4 83.2
 GLY-110   ILE-111  4.2 3.9 10.2 -0.6 46.4 47.0 18.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  9.8 9.3 3.9 -2.5 32.0 36.5 19.1
 ASP-216   SER-217  7.0 6.5 2.9 5.1 97.5 99.4 -20.6
 SER-217   LYS-218  3.3 2.8 6.5 21.5 70.0 82.2 48.2
 LYS-218   GLY-219  3.2 3.4 -20.2 -3.5 54.2 71.7 48.3
 GLY-219   TYR-220  5.1 5.0 -16.2 -1.0 73.4 73.5 -1.8
 TYR-220   GLY-221  8.5 8.2 -10.9 4.7 123.5 119.8 -2.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees