Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  6.3 6.4 -11.0 -2.8 45.2 41.1 38.0
 THR-107   LEU-108  3.6 4.3 -21.8 19.9 118.7 115.9 -18.2
 LEU-108   GLY-109  0.9 1.9 -19.3 3.1 42.4 47.7 38.9
 GLY-109   ILE-110  3.8 4.1 1.2 12.6 65.8 57.9 19.1
 ILE-110   SER-111  7.1 7.2 3.4 -2.4 72.9 70.3 -8.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  9.2 9.4 -4.5 16.5 135.5 137.4 40.0
 ASP-212   SER-213  5.8 6.0 19.1 -22.3 118.0 109.2 2.4
 SER-213   LYS-214  2.9 2.9 4.9 3.0 77.9 79.6 26.6
 LYS-214   GLY-215  0.9 1.0 -29.3 23.0 41.2 47.1 15.1
 GLY-215   TYR-216  4.0 4.3 -19.1 13.4 75.4 70.8 30.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees