Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase 1, Mitochondrial

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-261   VAL-262  22.4 23.2 166.5 2.5 108.0 114.2 -292.8
 VAL-262   ARG-263  20.5 21.1 -12.8 3.4 92.7 97.1 -29.0
 ARG-263   GLU-264  17.3 18.1 0.9 2.3 18.4 19.1 44.7
 GLU-264   ARG-265  17.5 18.2 -0.1 -1.7 112.1 112.7 -11.8
 ARG-265   ILE-266  17.9 18.1 3.8 -4.1 105.4 107.7 3.9
 ILE-266   ILE-267  15.1 15.1 1.3 15.6 57.9 61.1 71.5
 ILE-267   LYS-268  12.6 13.3 -17.1 -1.0 167.0 156.8 -115.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-275   ASP-276  3.2 3.2 -0.1 -1.0 64.0 68.7 -5.7
 ASP-276   GLY-277  1.6 2.1 8.9 -7.3 67.7 64.4 13.3
 GLY-277   MET-278  4.4 4.9 -0.5 -1.1 169.0 168.9 -13.7
 MET-278   TYR-279  3.5 3.9 -0.4 0.0 56.8 54.2 -31.3
 MET-278   TYR-279  3.5 3.9 -0.4 0.0 56.8 54.2 -31.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-278   TYR-279  3.5 3.9 -0.4 0.0 56.8 54.2 -31.3
 MET-278   TYR-279  3.5 3.9 -0.4 0.0 56.8 54.2 -31.3
 TYR-279   ALA-280  4.7 5.0 10.5 -5.5 137.3 133.6 -0.6
 ALA-280   ASN-281  2.1 2.4 17.6 -25.3 129.7 132.8 83.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-286   PRO-287  11.9 11.6 -4.0 -8.1 44.2 55.5 53.6
 PRO-287   LEU-288  8.7 7.9 -11.3 -10.2 60.1 56.4 42.2
 LEU-288   LEU-289  10.4 9.1 -8.1 -3.3 32.9 45.2 81.4
 LEU-289   ALA-290  12.6 12.0 -8.9 0.5 34.3 39.7 13.8
 ALA-290   SER-291  9.6 9.9 -5.6 3.9 52.0 46.2 -5.5
 SER-291   ASN-292  10.0 8.1 -12.7 31.8 45.3 44.8 -70.1
 ASN-292   PHE-293  12.8 11.5 -22.5 32.3 49.8 37.8 -33.0
 PHE-293   ILE-294  11.0 10.6 -24.7 14.4 63.7 58.5 26.0
 ILE-294   SER-295  7.9 7.1 9.9 -0.7 163.7 160.4 -56.7
 SER-295   PRO-296  7.9 7.0 -6.7 13.4 50.5 75.7 38.9
 PRO-296   ASN-297  8.2 7.7 -5.8 20.7 57.7 63.0 -3.9
 ASN-297   MET-298  4.9 4.4 -35.2 33.1 126.6 130.1 56.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-355   ASN-356  6.8 6.8 -1.0 2.9 96.7 104.4 -23.8
 ASN-356   LEU-357  6.0 6.1 -2.9 15.6 62.0 65.1 -5.1
 LEU-357   THR-358  3.3 3.4 -12.0 9.5 55.6 46.6 3.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-371   ALA-372  8.3 8.5 0.1 4.0 33.5 37.9 38.3
 ALA-372   ASN-373  7.7 7.9 -5.8 1.2 68.4 60.7 8.5
 ASN-373   TRP-374  7.0 6.8 -7.6 -2.3 116.9 111.0 -28.2
 TRP-374   MET-375  6.0 5.5 -0.4 34.9 146.3 148.4 170.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-395   THR-396  11.0 11.6 -23.4 28.7 105.8 112.3 16.8
 THR-396   LYS-397  7.3 7.9 14.8 -3.5 99.3 93.0 1.1
 LYS-397   VAL-398  7.1 7.5 -13.0 5.7 61.7 58.1 27.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees