Pyruvate Kinase, M2 Isozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-113   LYS-114  6.2 6.0 6.9 -6.7 124.3 123.5 4.8
 LYS-114   GLY-115  5.9 5.7 -1.5 -14.1 75.9 74.3 31.2
 GLY-115   PRO-116  2.3 2.3 23.8 -8.5 84.9 95.6 11.4
 PRO-116   GLU-117  3.8 4.5 -83.4 62.8 33.6 39.3 69.8
 GLU-117   ILE-118  6.7 6.5 -12.8 2.4 101.1 100.9 -8.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-218   ALA-219  6.9 6.3 -5.1 -7.3 121.7 120.8 -10.5
 ALA-219   VAL-220  5.3 4.5 -13.4 8.6 86.2 64.8 6.5
 VAL-220   SER-221  1.8 2.0 -41.7 6.6 67.4 53.3 99.5
 SER-221   GLU-222  3.1 3.1 2.2 9.7 151.5 145.7 -32.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees