Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  4.3 4.3 -10.5 0.8 38.7 37.5 38.7
 LEU-109   GLY-110  1.9 1.9 4.7 19.2 67.0 68.2 49.8
 GLY-110   ILE-111  3.3 3.4 -8.6 0.5 38.6 37.5 20.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-195   MET-196  3.2 3.1 11.4 -1.9 22.2 30.4 55.3
 MET-196   ASN-197  4.4 4.7 -0.8 2.3 126.4 130.3 9.5
 ASN-197   GLU-198  2.0 2.3 9.9 2.2 68.7 66.0 58.8
 GLU-198   TYR-199  1.8 1.7 -9.9 4.9 127.3 133.1 -24.7
 TYR-199   ILE-200  3.9 4.3 0.9 -0.5 22.4 24.0 3.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-203   LYS-204  4.0 4.0 -3.4 3.6 35.8 37.5 -13.4
 LYS-204   PRO-205  2.9 2.9 1.1 -10.5 90.9 91.5 13.5
 PRO-205   CYS-206  0.2 0.5 19.6 -9.5 60.8 56.6 26.1
 CYS-206   ASP-207  2.6 1.9 1.1 1.7 91.1 91.3 -7.7
 ASP-207   THR-208  4.6 4.2 -3.7 -3.2 150.7 150.2 -27.6
 THR-208   MET-209  4.7 4.5 4.9 -15.0 51.3 49.1 -52.3
 MET-209   LYS-210  6.2 5.1 15.6 4.6 23.1 28.0 95.5
 LYS-210   VAL-211  5.8 5.4 3.3 7.7 69.7 80.9 11.8
 LYS-210   VAL-211  5.8 5.4 3.3 7.7 69.7 80.9 11.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-210   VAL-211  5.8 5.4 3.3 7.7 69.7 80.9 11.8
 LYS-210   VAL-211  5.8 5.4 3.3 7.7 69.7 80.9 11.8
 VAL-211   GLY-212  9.2 9.1 -9.8 -5.1 160.9 161.4 -76.6
 GLY-212   GLY-213  10.5 10.6 14.0 -0.7 49.6 47.8 59.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.4 8.8 -0.5 -3.7 30.2 24.0 20.5
 ASP-216   SER-217  6.1 6.5 -2.6 -2.9 91.1 91.3 3.7
 SER-217   LYS-218  2.7 2.9 3.2 -27.9 102.3 115.1 53.5
 LYS-218   GLY-219  4.2 3.8 13.4 6.0 79.9 62.9 14.6
 GLY-219   TYR-220  6.0 5.9 19.4 -0.4 77.9 79.0 6.1
 TYR-220   GLY-221  9.4 9.4 12.4 -7.8 128.3 130.9 -17.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees