Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-108   GLY-109  5.3 5.0 -7.1 14.2 144.5 144.5 23.4
 GLY-109   ILE-110  2.1 1.8 -44.5 37.7 67.0 70.8 17.1
 ILE-110   SER-111  1.8 2.0 -1.2 -8.6 68.7 69.4 34.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-143   THR-144  10.0 10.3 -18.1 6.9 25.3 25.0 59.6
 THR-144   PHE-145  9.8 10.1 19.0 -10.1 124.6 117.1 -35.8
 PHE-145   PHE-146  6.2 6.4 1.0 -6.6 118.6 124.7 3.5
 MET-157   TRP-158  12.9 12.8 10.3 5.3 87.4 87.5 14.5
 TRP-158   ALA-159  12.7 12.5 0.3 -0.3 106.6 108.8 -8.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-210   ILE-211  5.9 4.9 62.8 -60.6 159.9 142.0 -35.8
 ILE-211   ASP-212  4.1 3.9 178.5 156.5 100.2 125.7 -45.4
 ASP-212   SER-213  1.5 1.7 128.2 -68.4 63.6 57.1 159.2
 SER-213   LYS-214  4.8 4.8 -24.0 68.2 88.1 99.7 108.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees