Tryptophanyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-8   GLN-9  9.4 9.5 -2.6 -5.3 72.1 76.4 31.8
 GLN-9   PRO-10  11.2 11.4 -3.7 -12.3 26.1 31.2 99.1
 PRO-10   SER-11  11.7 12.1 -72.8 54.3 100.4 101.1 -47.4
 SER-11   GLY-12  11.4 12.8 -155.0 -139.5 44.2 66.9 -413.0
 GLY-12   VAL-13  11.6 11.1 -154.9 44.9 93.7 62.7 221.6
 VAL-13   ILE-14  8.6 8.0 14.9 54.8 68.1 49.3 281.5
 ILE-14   THR-15  5.0 4.8 27.9 -8.9 88.7 93.7 -99.0
 THR-15   ILE-16  3.7 3.7 9.5 1.1 91.5 83.6 20.2
 ILE-16   GLY-17  3.5 3.4 -4.6 -4.1 156.4 156.6 -62.1
 GLY-17   ASN-18  2.6 2.5 -3.0 3.0 86.2 87.9 -28.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-19   ILE-20  2.9 2.5 -5.2 6.7 126.4 127.1 -45.6
 ILE-20   GLY-21  5.3 4.8 2.2 -0.7 38.5 38.5 41.6
 GLY-21   ALA-22  4.5 4.1 1.0 -12.6 103.0 100.0 46.6
 ALA-22   LEU-23  6.1 6.0 3.8 1.0 151.9 157.5 -34.1
 LEU-23   ARG-24  6.7 6.4 -6.7 9.4 79.0 69.3 -18.1
 ARG-24   GLN-25  8.5 7.6 -4.8 -8.3 117.7 108.9 12.4
 GLN-25   PHE-26  10.7 10.5 17.9 -0.2 121.2 108.9 -43.1
 PHE-26   VAL-27  11.7 11.4 13.2 2.5 136.8 141.1 -100.7
 VAL-27   GLU-28  12.5 12.3 3.9 -25.1 70.9 81.8 -71.6
 GLU-28   LEU-29  14.6 15.2 3.3 29.1 72.9 57.8 117.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-180   ALA-181  7.6 7.1 -5.4 3.7 109.1 110.7 14.7
 ALA-181   ARG-182  5.4 4.8 12.4 -4.7 84.7 79.7 67.6
 ARG-182   ILE-183  3.8 3.5 -6.9 -2.3 61.4 63.6 22.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-280   ARG-281  5.5 5.4 8.4 7.5 10.3 9.8 103.9
 ARG-281   PRO-282  6.1 6.3 -8.8 -3.2 111.1 111.4 -61.8
 PRO-282   ILE-283  5.9 6.0 6.6 -3.5 113.0 110.0 -3.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees