Lysr-Type Regulatory Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-165   LEU-166  3.1 3.0 -17.5 25.9 73.1 70.2 20.7
 LEU-166   PHE-167  4.8 4.6 1.9 0.5 86.9 79.2 -11.5
 PHE-167   ARG-168  4.7 4.3 5.1 -23.5 102.0 101.1 76.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-268   PRO-269  15.6 15.5 8.4 4.6 132.6 129.7 -39.1
 PRO-269   ASP-270  12.7 12.5 8.4 12.5 69.6 80.0 49.0
 ASP-270   ILE-271  9.4 9.2 -5.6 6.6 108.8 134.6 -33.4
 ILE-271   ALA-272  6.3 6.4 -19.5 -10.4 61.5 59.7 71.9
 ALA-272   ILE-273  3.2 3.4 -16.4 15.6 133.6 132.5 5.8
 ILE-273   ASN-274  0.2 0.3 0.6 -8.5 123.8 120.1 12.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees