D-Galactose/d-Glucose Binding Protein (/Ggbp)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-11   TYR-12  6.7 6.5 -6.5 -0.9 97.0 102.7 -207.8
 TYR-12   ASP-13  4.4 4.3 2.1 -9.8 63.1 65.7 -305.7
 ASP-13   ASP-14  2.3 2.1 2.0 1.4 125.7 121.5 203.1
 ASP-14   ASN-15  3.5 3.4 -0.7 -8.7 83.8 83.0 107.4
 ASN-15   PHE-16  3.8 3.6 8.5 -9.4 152.4 154.4 83.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-21   LYS-22  5.8 5.9 0.5 -0.4 99.3 100.8 87.6
 LYS-22   ALA-23  8.4 8.4 -6.6 5.0 144.5 141.8 13.1
 ALA-23   ILE-24  9.3 9.5 5.0 -0.5 62.5 60.2 -130.8
 ILE-24   GLU-25  9.5 9.5 -4.4 4.8 61.3 62.1 126.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-26   ASP-27  13.8 14.1 0.6 3.4 25.7 25.0 32.7
 ASP-27   ALA-28  13.9 14.2 -7.2 5.4 93.5 88.3 -52.9
 ALA-28   LYS-29  15.6 15.7 -6.6 -17.3 67.7 65.0 374.8
 LYS-29   ALA-30  18.2 18.2 -2.6 17.3 136.6 122.4 64.9
 ALA-30   ALA-31  19.6 19.5 -20.0 10.9 131.9 138.3 -211.0
 ALA-31   PRO-32  20.0 20.0 12.0 -6.0 125.0 111.7 -32.7
 PRO-32   ASP-33  23.2 23.3 9.7 -11.2 82.6 74.8 -92.9
 ASP-33   VAL-34  23.5 23.2 22.0 -20.5 102.8 100.3 2.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-105   TYR-106  12.4 12.3 0.9 -1.4 108.6 107.5 -51.9
 TYR-106   TYR-107  8.6 8.6 -1.4 4.4 136.7 136.8 14.9
 TYR-107   VAL-108  5.8 5.8 1.3 6.1 87.8 86.9 -88.2
 VAL-108   GLY-109  2.6 2.5 0.1 16.6 53.2 54.7 212.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-256   ASP-257  8.2 8.2 1.5 -1.2 93.8 95.8 -5.7
 ASP-257   ALA-258  7.8 7.7 -4.7 8.2 72.8 72.8 24.1
 ALA-258   ASN-259  5.7 5.9 -1.3 -8.0 107.8 109.6 -98.1
 ASN-259   ASN-260  8.6 8.7 4.5 -5.5 23.0 21.7 114.4
 ASN-260   GLN-261  7.8 8.0 10.5 -7.3 88.7 81.5 -169.2
 GLN-261   ALA-262  4.2 4.4 1.7 -7.7 113.6 115.3 146.4
 GLN-261   ALA-262  4.2 4.4 1.7 -7.7 113.6 115.3 146.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-261   ALA-262  4.2 4.4 1.7 -7.7 113.6 115.3 146.4
 GLN-261   ALA-262  4.2 4.4 1.7 -7.7 113.6 115.3 146.4
 ALA-262   LYS-263  6.3 6.3 10.5 -1.1 49.9 56.0 143.9
 LYS-263   ALA-264  9.1 9.2 -8.5 8.0 142.5 141.9 -118.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-283   TRP-284  11.2 11.1 16.6 -19.3 82.6 73.3 -39.1
 TRP-284   LYS-285  7.6 7.5 -0.5 -2.4 32.4 34.4 -46.6
 LYS-285   ILE-286  4.9 4.9 7.1 -4.6 75.7 75.2 -76.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees