Groel

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-188   VAL-189  6.5 7.9 -1.1 11.7 76.0 83.5 4.1
 VAL-189   VAL-190  6.4 6.7 -6.1 23.2 133.6 136.5 36.8
 VAL-190   GLU-191  4.6 3.8 11.7 -16.9 102.6 92.0 1.0
 GLU-191   GLY-192  6.9 5.2 75.2 -68.9 135.7 135.9 69.9
 GLY-192   MET-193  7.2 7.1 -5.2 2.6 53.1 56.1 2.2
 MET-193   GLN-194  9.6 9.6 -15.8 20.1 27.9 29.2 -17.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-371   LEU-372  14.0 14.0 11.9 -10.4 152.6 153.9 3.9
 LEU-372   ALA-373  13.7 13.9 36.4 -26.6 120.3 122.2 -16.3
 GLY-374   GLY-375  12.9 11.7 -4.3 9.4 87.5 84.8 2.5
 GLY-375   VAL-376  9.2 8.0 26.8 -18.6 31.5 29.0 23.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees