Lactoferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-89   THR-90  0.9 1.4 -24.3 -0.2 47.6 57.4 33.4
 THR-90   HIS-91  2.3 2.5 -39.4 -25.2 28.5 17.4 96.7
 HIS-91   TYR-92  1.1 2.3 12.5 2.7 86.5 93.2 8.8
 TYR-92   TYR-93  3.7 4.7 -7.8 4.3 45.7 39.3 1.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-248   ARG-249  7.8 7.8 -4.7 -3.5 30.3 21.6 6.1
 ARG-249   VAL-250  6.1 6.4 5.5 20.2 72.4 76.9 26.5
 VAL-250   PRO-251  2.4 2.7 -26.4 -12.3 45.0 24.0 63.3
 PRO-251   SER-252  2.4 3.5 6.2 -2.7 93.5 98.5 9.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees