Iron Abc Transporter, Periplasmic Iron-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-118   VAL-119  6.0 6.1 -9.8 16.1 145.2 143.4 12.2
 VAL-119   ARG-120  3.1 3.2 -5.4 -0.6 65.2 65.2 0.9
 ARG-120   LEU-121  0.7 0.8 9.4 -1.3 39.0 40.9 39.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-243   LEU-244  7.1 7.5 -5.1 -5.1 86.3 87.1 1.4
 LEU-244   ALA-245  3.8 4.1 -2.1 -7.5 143.2 145.3 -30.9
 ALA-245   LEU-246  1.0 1.5 -5.5 -6.7 93.1 80.1 -18.3
 LEU-246   VAL-247  2.5 2.3 70.0 -40.8 60.5 44.8 143.9
 VAL-247   THR-248  4.7 5.1 5.5 19.5 70.0 75.0 15.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-286   LEU-287  7.0 7.0 -0.2 3.4 137.5 145.8 -0.4
 LEU-287   VAL-288  9.7 9.5 -13.5 27.7 75.8 78.0 19.4
 VAL-288   LYS-289  12.8 12.7 -32.5 19.9 50.8 66.6 21.7
 LYS-289   GLY-290  14.8 14.4 -34.8 20.8 26.8 13.7 89.1
 GLY-290   VAL-291  15.1 14.8 -39.2 34.6 62.6 48.9 43.1
 VAL-291   ALA-292  11.5 11.4 -31.8 -3.8 76.6 94.8 -94.6
 ALA-292   LEU-293  10.6 10.5 28.8 2.7 56.9 97.5 -50.5
 LEU-293   ASP-294  9.7 8.1 9.7 17.2 107.1 135.8 -119.4
 ASP-294   PRO-295  8.6 8.8 -8.2 21.6 112.6 125.3 -20.3
 PRO-295   ASN-296  11.4 12.2 13.8 -22.1 45.9 66.4 -40.4
 ASN-296   LEU-297  9.8 11.7 -3.8 25.1 148.8 143.1 106.3
 LEU-297   LEU-298  8.6 9.2 3.7 30.0 65.3 32.0 149.0
 LEU-298   PRO-299  11.0 10.1 -45.5 -6.9 98.5 103.6 -39.8
 PRO-299   LEU-300  11.7 10.5 8.5 -5.8 49.3 35.7 16.9
 LEU-300   GLU-301  9.4 8.4 -2.0 -6.5 158.4 156.1 -44.1
 GLU-301   GLU-302  11.9 11.0 -0.8 4.4 117.6 112.6 26.4
 GLU-302   ALA-303  11.8 11.7 -4.3 1.3 105.7 107.6 -0.3
 ALA-303   LEU-304  8.0 8.2 -3.9 -2.5 151.7 154.4 -30.1
 LEU-304   ALA-305  8.0 7.4 10.0 -1.9 44.1 39.3 28.0
 ALA-305   LYS-306  10.7 10.4 16.8 -3.0 73.1 68.8 32.6
 LYS-306   SER-307  9.6 9.6 1.4 -18.8 60.5 47.6 -33.0
 SER-307   PRO-308  6.0 6.2 -0.7 9.2 177.6 159.7 15.1
 PRO-308   LYS-309  5.1 5.2 13.9 -14.0 74.6 96.3 -56.9
 LYS-309   LEU-310  5.0 5.0 18.2 -5.2 57.4 54.7 31.4
 LEU-310   ASP-311  2.2 2.8 -8.9 6.8 73.7 71.8 2.3
 ASP-311   LEU-312  4.9 5.7 -6.1 9.8 53.0 64.8 -35.0
 LEU-312   GLU-313  4.9 5.5 -22.7 5.1 92.6 102.4 -29.8
 LEU-312   GLU-313  4.9 5.5 -22.7 5.1 92.6 102.4 -29.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-312   GLU-313  4.9 5.5 -22.7 5.1 92.6 102.4 -29.8
 LEU-312   GLU-313  4.9 5.5 -22.7 5.1 92.6 102.4 -29.8
 GLU-313   LYS-314  8.6 9.1 7.0 20.4 44.6 23.5 100.1
 LYS-314   LEU-315  7.8 7.9 -24.0 3.0 87.5 91.6 26.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees