Nad-Dependent Deacetylase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-29
ILE-30
5.7
6.0
-13.0
8.1
37.6
37.5
-1.2
ILE-30
PRO-31
6.1
6.8
5.3
6.9
104.2
98.5
4.1
PRO-31
ASP-32
9.9
10.6
-7.8
-3.5
11.0
28.8
80.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-72
GLN-73
5.0
5.0
-1.8
2.8
21.9
22.2
-6.1
GLN-73
ALA-74
4.4
4.5
-0.5
-0.8
78.0
77.0
17.7
ALA-74
LYS-75
0.7
0.8
2.0
-12.7
87.4
87.0
12.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-115
HIS-116
5.6
6.1
4.9
3.4
88.3
84.3
12.7
HIS-116
GLY-117
4.4
5.1
-6.8
1.9
97.7
92.9
5.9
GLY-117
ASN-118
1.0
1.7
1.3
1.6
15.9
19.1
17.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-165
LEU-166
8.0
7.9
-11.9
-7.8
47.5
43.3
65.0
LEU-166
PRO-167
6.1
6.1
9.4
1.8
56.1
65.4
33.6
PRO-167
GLN-168
2.7
2.7
8.7
11.7
60.4
55.6
70.2
GLN-168
ASP-169
4.5
4.2
-22.0
-4.6
88.0
77.3
-13.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-190
LEU-191
18.8
18.5
-6.4
1.1
21.4
21.5
21.7
LEU-191
VAL-192
18.8
18.5
5.9
1.0
120.9
121.4
12.2
VAL-192
VAL-193
19.6
19.2
44.2
-36.4
126.9
132.5
-36.6
VAL-193
TYR-194
16.5
16.2
-6.2
-30.8
43.7
44.1
171.2
TYR-194
PRO-195
15.0
15.5
16.2
12.1
76.1
107.7
-48.0
PRO-195
ALA-196
13.8
14.2
-21.9
13.0
127.7
134.0
-39.2
ALA-196
ALA-197
15.3
13.4
-20.7
5.5
82.1
103.9
-44.4
ALA-197
GLU-198
18.8
17.0
27.4
-10.7
140.2
132.0
-27.2
GLU-198
LEU-199
18.1
18.3
14.0
8.3
81.9
81.7
24.4
LEU-199
PRO-200
17.1
17.2
2.8
0.5
70.3
67.2
20.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees