Ubiquinol Cytochrome C Oxidoreductase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-132   VAL-133  11.8 11.9 -4.9 4.0 137.7 143.6 -64.7
 VAL-133   LEU-134  11.1 11.6 -4.7 1.0 99.8 101.7 -83.5
 LEU-134   PRO-135  8.4 8.8 -6.2 4.9 75.5 76.9 -2.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-174   THR-175  10.9 10.8 -61.0 75.0 134.7 145.0 302.4
 THR-175   LEU-176  12.9 13.3 -20.7 5.6 145.3 136.0 -328.6
 LEU-176   THR-177  10.2 10.5 -15.2 5.4 82.7 84.6 -9.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-245   PHE-246  4.1 4.3 -1.7 -2.7 62.1 62.2 151.9
 PHE-246   SER-247  2.3 2.3 -0.9 -20.7 119.4 117.3 -243.4
 SER-247   PRO-248  5.0 4.7 -2.5 3.6 152.1 141.9 51.8
 PRO-248   ASN-249  4.3 5.0 -21.1 23.7 126.0 119.2 97.8
 ASN-249   LEU-250  6.8 7.0 1.7 -1.2 118.2 124.0 73.2
 LEU-250   LEU-251  9.4 9.2 -8.4 20.7 122.8 120.0 106.9
 LEU-251   GLY-252  11.7 11.8 -40.9 37.2 166.4 162.3 -98.9
 GLY-252   ASP-253  10.5 10.4 -10.8 8.3 107.2 101.3 -52.1
 ASP-253   PRO-254  12.4 12.4 11.0 -19.5 69.0 68.3 -181.6
 PRO-254   GLU-255  11.3 10.8 5.3 8.2 15.7 23.5 273.9
 GLU-255   ASN-256  13.1 13.1 -9.1 12.1 127.9 138.3 49.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-261   PRO-262  13.3 13.5 0.8 -1.9 105.3 112.8 23.1
 PRO-262   LEU-263  15.6 14.9 -9.5 11.0 86.7 84.9 160.5
 LEU-263   VAL-264  18.4 18.0 -34.6 9.7 155.8 145.1 -444.8
 VAL-264   THR-265  18.9 19.0 17.5 -2.2 62.2 44.7 250.4
 THR-265   PRO-266  19.8 19.2 5.6 15.3 16.2 34.6 541.0
 PRO-266   PRO-267  19.4 19.2 -32.1 21.9 109.0 116.5 -104.8
 PRO-267   HIS-268  22.4 22.5 -14.4 18.2 126.1 146.2 81.9
 HIS-268   ILE-269  22.3 21.8 -3.9 -8.2 69.8 74.8 64.5
 ILE-269   LYS-270  20.5 20.1 -20.9 44.4 116.8 129.1 247.9
 LYS-270   PRO-271  20.3 19.8 -25.6 9.3 91.1 77.6 -9.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees