Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-85   GLY-86  7.0 6.8 9.6 -19.7 113.5 111.7 15.3
 GLY-86   PRO-87  3.3 3.1 23.0 -15.5 84.1 94.3 -1.1
 PRO-87   GLU-88  3.8 4.1 -67.1 24.9 40.5 40.9 152.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-177   ASN-178  11.3 11.8 -34.2 18.9 102.4 102.4 -3.7
 ASN-178   LEU-179  8.8 9.1 -24.7 17.6 113.1 107.7 -7.3
 LEU-179   PRO-180  9.6 10.1 -5.5 14.6 128.6 121.3 -27.5
 PRO-180   GLY-181  7.8 8.2 171.6 138.9 81.3 87.1 15.6
 GLY-181   CYS-182  10.7 9.6 48.0 -24.1 149.2 132.9 -11.2
 CYS-182   ASP-183  11.0 11.2 1.8 -7.8 128.0 140.8 26.0
 ASP-183   VAL-184  10.6 11.0 -12.9 4.2 30.9 32.7 40.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-187   ALA-188  5.8 5.3 -27.0 12.0 110.3 113.1 -24.9
 ALA-188   VAL-189  4.1 3.4 1.1 11.2 109.7 125.3 -3.6
 VAL-189   SER-190  1.5 1.6 -38.0 16.1 58.5 54.6 59.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees