Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-108   GLY-109  1.1 1.1 -1.5 -15.9 67.8 70.7 27.5
 GLY-109   ILE-110  2.7 2.8 11.6 14.0 37.0 35.1 81.9
 ILE-110   SER-111  5.7 5.9 1.1 -1.6 66.7 64.4 45.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-193   ILE-194  2.7 2.0 -6.4 9.7 54.0 58.2 10.4
 ILE-194   GLU-195  1.0 1.7 -4.1 -13.7 74.2 73.9 34.8
 GLU-195   TYR-196  3.7 4.2 13.2 -9.1 140.7 133.6 -5.0
 TYR-196   VAL-197  4.2 4.4 0.6 3.2 151.8 156.9 -19.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  8.8 8.9 6.4 5.3 27.3 32.2 48.3
 ASP-212   SER-213  6.2 6.4 3.8 6.1 90.7 88.8 -7.6
 SER-213   LYS-214  2.7 2.8 16.3 -3.4 68.8 78.0 50.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees