Glutamate [Nmda] Receptor Subunit Zeta 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-143   GLN-144  8.0 7.9 26.5 30.8 73.6 74.9 64.8
 GLN-144   GLY-145  4.3 4.4 -50.8 -8.8 36.7 56.7 179.1
 GLY-145   LEU-146  1.2 1.2 -20.0 -6.3 109.2 120.4 -43.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-244   PHE-245  5.4 6.1 0.1 -4.0 15.6 14.6 -16.9
 PHE-245   PHE-246  3.7 4.5 2.8 -2.0 91.1 81.3 1.8
 PHE-246   ARG-247  0.6 1.2 5.2 -19.1 132.3 122.9 60.5
 ARG-247   SER-248  2.7 3.0 18.1 -14.5 81.8 70.9 45.0
 SER-248   GLY-249  5.2 5.7 39.5 -31.8 144.8 146.0 -21.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees