D-Galactose/d-Glucose Binding Protein (/Ggbp)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-107   VAL-108  17.5 17.3 5.5 -1.5 60.8 63.1 -6.2
 VAL-108   GLY-109  15.0 14.7 0.5 -16.6 87.1 88.2 -1.1
 GLY-109   THR-110  11.4 11.2 -52.0 0.4 74.5 53.3 85.1
 THR-110   ASP-111  8.2 7.8 -37.5 30.7 14.1 66.4 -22.3
 ASP-111   SER-112  6.4 6.4 40.4 -8.9 83.0 59.6 36.3
 SER-112   LYS-113  5.7 5.5 13.6 -0.5 113.7 115.4 -8.2
 LYS-113   GLU-114  3.2 3.4 12.3 -9.3 62.2 70.3 -9.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-253   VAL-254  6.7 6.9 -1.9 5.8 112.3 114.5 11.1
 VAL-254   LEU-255  3.1 3.6 -3.8 -18.3 55.6 62.4 43.5
 LEU-255   ASN-256  0.3 0.9 6.1 13.4 58.2 48.0 36.1
 ASN-256   ASP-257  3.5 3.1 1.7 -2.8 137.1 130.3 0.1
 ASP-257   ALA-258  5.6 5.7 -8.1 4.7 71.3 75.6 -5.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-292   VAL-293  11.0 11.0 4.2 -11.3 48.6 33.7 -29.8
 VAL-293   PRO-294  9.2 9.4 -28.1 10.1 76.7 83.4 7.1
 PRO-294   TYR-295  6.6 6.7 -8.4 19.5 125.2 134.5 26.4
 TYR-295   VAL-296  3.0 3.3 1.8 5.0 80.1 77.6 27.4
 VAL-296   GLY-297  4.4 5.1 2.7 -1.6 80.1 72.4 26.8
 GLY-297   VAL-298  5.5 6.5 -11.7 11.5 154.2 158.8 9.3
 VAL-298   ASP-299  6.8 7.3 -2.0 -4.6 94.4 101.2 1.1
 ASP-299   LYS-300  10.3 10.7 10.8 -8.7 40.0 45.0 -0.2
 LYS-300   ASP-301  13.0 13.4 17.2 -0.8 92.8 97.9 15.2
 ASP-301   ASN-302  14.3 14.2 -10.0 5.3 104.4 116.1 -3.9
 ASN-302   LEU-303  11.6 11.3 1.8 -11.0 44.7 43.7 -19.1
 LEU-303   ALA-304  9.4 9.6 19.1 -17.8 43.8 35.1 17.5
 ALA-304   GLU-305  10.7 10.8 -6.2 35.3 82.6 87.5 -7.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees