DNA Damage-Binding Protein 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-390   ARG-391  7.5 7.4 -4.6 2.2 103.3 109.9 -4.3
 ARG-391   ASN-392  5.0 5.0 7.3 -0.4 71.1 69.5 1.9
 ASN-392   GLY-393  1.3 1.4 -21.4 141.4 164.1 175.2 95.0
 GLY-393   ILE-394  0.5 1.1 -4.5 6.9 129.1 120.1 -3.0
 ILE-394   GLY-395  1.9 1.7 22.1 -20.5 64.7 61.3 -4.9
 GLY-395   ILE-396  5.0 4.5 41.2 -35.9 15.0 21.4 7.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-702   THR-703  8.3 8.1 -7.7 -7.6 103.3 106.7 -2.1
 THR-703   ILE-704  7.8 7.3 -2.6 49.8 143.8 153.6 34.6
 ILE-704   ASP-705  5.7 5.4 -3.1 -22.9 134.4 138.3 -13.3
 ASP-705   GLU-706  6.8 7.0 151.0 102.6 91.6 53.7 0.3
 GLU-706   ILE-707  8.2 6.1 -75.7 -75.9 108.9 145.8 126.1
 ILE-707   GLN-708  6.6 7.1 -11.1 119.2 152.1 122.5 67.5
 GLN-708   LYS-709  6.6 4.1 -37.1 -62.0 117.7 116.9 -84.1
 LYS-709   LEU-710  4.5 4.7 -148.2 17.0 113.4 103.4 -26.8
 LEU-710   HIS-711  4.6 4.3 5.0 -8.5 123.1 123.0 -1.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees