Thioredoxin Reductase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-121   PHE-122  6.8 6.9 0.3 -0.4 66.2 64.9 0.2
 PHE-122   GLU-123  3.8 3.9 3.9 1.4 2.3 5.8 24.0
 GLU-123   PRO-124  2.4 2.8 1.7 1.4 78.1 74.3 15.4
 PRO-124   ARG-125  1.3 1.5 -10.3 -8.0 94.5 93.5 -11.2
 ARG-125   ARG-126  3.8 3.3 0.9 14.4 14.1 23.8 62.8
 ARG-126   ILE-127  5.1 4.9 2.9 1.2 89.2 93.4 -0.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-249   TYR-250  6.3 6.3 -16.5 4.1 84.8 83.4 -1.2
 TYR-250   ILE-251  2.6 2.8 -3.9 2.5 119.6 131.7 -23.4
 ILE-251   THR-252  2.7 1.5 -0.6 13.4 105.0 101.8 29.9
 THR-252   LYS-253  3.8 3.2 6.2 -8.2 98.6 98.0 44.3
 LYS-253   LEU-254  7.5 7.0 7.5 12.1 60.3 59.5 55.6
 LEU-254   GLY-255  10.2 9.6 -3.7 17.0 44.0 53.0 -40.5
 GLY-255   PRO-256  12.0 11.2 -27.5 10.1 96.3 97.8 8.6
 PRO-256   LEU-257  15.0 14.4 -13.0 3.4 155.4 151.0 -31.9
 LEU-257   ALA-258  15.1 15.0 0.8 7.2 66.6 67.2 21.3
 ALA-258   ASN-259  16.8 16.3 -13.2 14.1 67.4 67.4 -4.4
 ASN-259   TRP-260  19.7 19.2 7.4 -12.1 75.4 75.9 -14.3
 TRP-260   GLY-261  20.6 20.5 10.2 -12.4 47.4 45.8 -7.6
 GLY-261   LEU-262  23.0 22.8 18.4 -8.9 17.0 20.7 36.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees