Anti-Sigma F Factor Antagonist

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-78   LEU-79  8.8 8.6 4.5 -1.9 114.4 103.2 1.2
 LEU-79   LEU-80  8.3 8.2 -5.6 12.4 70.8 71.1 -5.3
 LEU-80   ASN-81  4.7 4.8 -2.7 1.2 57.5 59.3 69.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-101   ALA-102  1.2 1.0 -2.1 -7.6 59.4 61.8 -20.2
 ALA-102   THR-103  2.3 2.0 -5.3 -8.3 45.5 40.4 70.0
 THR-103   GLU-104  3.5 3.1 7.1 -0.9 136.9 135.4 -38.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees