Mrna Capping Enzyme Alpha Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-5   GLU-6  6.6 6.2 7.7 14.0 61.0 67.0 46.4
 GLU-6   ARG-7  5.6 5.7 7.7 -0.1 94.4 76.5 7.3
 ARG-7   GLU-8  3.0 3.8 15.3 -43.7 137.8 136.8 99.8
 GLU-8   ILE-9  3.6 3.6 -44.9 22.9 107.4 109.8 -31.2
 ILE-9   PRO-10  7.4 7.3 11.1 0.2 134.2 137.6 -39.7
 PRO-10   VAL-11  9.4 9.5 8.0 -15.6 120.6 117.6 26.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-243   PRO-244  5.6 5.6 5.2 4.2 136.5 132.8 -30.2
 PRO-244   ALA-245  3.9 3.9 15.6 -6.0 108.3 110.2 -13.1
 ALA-245   GLU-246  1.5 1.1 -3.3 -16.2 90.0 104.2 -17.0
 GLU-246   GLU-247  2.6 3.2 -6.0 66.0 141.2 161.1 291.0
 GLU-247   ASN-248  2.5 2.4 -73.3 28.5 112.8 97.9 -93.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-361   LYS-362  2.9 3.1 -4.5 -25.9 139.3 140.6 -128.6
 LYS-362   ASP-363  2.3 3.0 94.3 -54.4 67.2 47.4 126.9
 ASP-363   GLY-364  1.2 1.4 -25.5 -10.0 51.7 65.1 100.8
 GLY-364   VAL-365  3.2 2.8 21.6 -9.2 107.6 97.4 -5.9
 VAL-365   LYS-366  5.8 5.4 4.5 13.7 141.1 136.4 -73.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees