Amine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-168   LEU-169  3.7 3.7 -1.3 3.8 116.3 114.2 40.5
 LEU-169   GLN-170  2.2 1.9 -4.0 2.5 83.3 83.3 8.4
 GLN-170   TYR-171  3.1 2.9 -1.0 1.4 109.1 108.7 0.2
 TYR-171   ASN-172  6.9 6.6 -1.9 0.4 75.6 74.5 9.1
 ASN-172   VAL-173  10.3 10.1 3.3 -0.6 138.6 139.8 -84.6
 VAL-173   ASP-174  11.7 11.3 -3.9 1.8 93.2 90.6 39.6
 ASP-174   HIS-175  15.2 14.9 -1.5 -1.2 116.1 114.4 16.9
 HIS-175   TYR-176  15.7 15.3 1.4 3.5 123.2 120.7 6.4
 TYR-176   GLY-177  15.3 14.9 -5.9 -2.9 40.5 43.4 83.6
 GLY-177   GLN-178  18.3 17.9 6.5 -14.0 138.2 144.0 258.6
 GLN-178   VAL-179  18.9 18.2 -159.9 160.9 45.8 58.4 -247.7
 VAL-179   LEU-180  17.0 16.3 -14.5 -2.3 102.7 107.7 -134.2
 LEU-180   ALA-181  13.8 13.1 -0.7 -2.5 97.4 93.9 1.4
 ALA-181   ILE-182  14.1 13.8 2.7 0.4 154.9 157.1 -26.7
 ILE-182   ALA-183  14.7 14.2 -0.6 -0.8 67.7 71.9 13.4
 ALA-183   HIS-184  11.4 10.7 0.0 -1.0 68.2 67.0 -93.2
 HIS-184   GLY-185  9.7 9.6 154.1 -155.1 100.0 107.1 -49.5
 GLY-185   VAL-186  12.2 11.6 3.6 -1.4 49.0 61.8 65.8
 VAL-186   GLY-187  14.7 14.5 -2.8 1.0 61.0 52.1 -12.9
 GLY-187   LEU-188  18.0 17.8 -18.3 -17.3 28.1 37.1 269.1
 LEU-188   SER-189  16.6 16.1 25.9 -100.4 80.3 84.6 49.6
 TYR-194   ALA-195  10.7 10.8 -5.2 1.4 18.6 18.1 47.8
 ALA-195   GLU-196  11.6 11.6 -1.3 -2.6 75.5 77.5 -50.2
 GLU-196   ASN-197  8.9 8.7 -154.6 -171.3 112.9 111.1 347.8
 ASN-197   GLY-198  8.0 10.2 5.0 -41.5 34.5 11.4 -380.2
 GLY-198   PRO-199  9.8 10.3 -42.4 -1.2 133.3 114.0 -471.5
 PRO-199   GLY-200  8.1 7.4 166.1 -148.0 91.7 65.8 143.0
 GLY-200   TRP-201  6.9 6.6 -26.4 3.7 36.4 37.6 567.7
 TRP-201   THR-202  5.4 5.4 0.4 -13.2 81.1 76.8 -77.3
 THR-202   SER-203  2.0 1.7 24.9 2.1 144.8 131.2 -203.1
 SER-203   PRO-204  1.5 2.3 1.9 2.7 82.2 71.0 10.9
 PRO-204   THR-205  4.9 5.7 -1.3 -0.6 83.3 78.3 -12.0
 THR-205   SER-206  4.9 5.6 -2.5 -5.5 132.7 118.8 -31.1
 SER-206   TYR-207  4.1 4.1 6.0 9.6 63.0 54.5 61.1
 TYR-207   PRO-208  7.6 7.4 5.8 0.0 70.5 73.1 37.8
 PRO-208   LYS-209  8.7 8.5 -0.5 -2.5 115.2 116.2 -12.6
 LYS-209   SER-210  6.5 6.5 -2.8 0.8 158.8 157.4 -21.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-230   GLU-231  10.3 10.4 -3.6 -1.9 60.6 60.7 24.7
 GLU-231   GLU-232  7.5 7.6 -4.8 4.1 134.9 135.8 -20.4
 GLU-232   VAL-233  4.0 4.2 -4.0 2.8 76.4 71.9 13.8
 VAL-233   LYS-234  4.9 5.1 -3.6 0.0 122.7 122.9 -20.0
 LYS-234   THR-235  4.6 4.6 -6.9 -1.0 100.0 93.9 80.8
 THR-235   PRO-236  7.9 8.0 2.9 2.8 62.3 57.8 31.1
 PRO-236   THR-237  10.2 10.4 1.3 2.4 23.2 23.5 -11.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-260   ILE-261  7.2 7.3 -4.4 1.2 58.3 59.6 15.5
 ILE-261   VAL-262  4.4 4.6 0.4 3.8 35.6 36.1 27.7
 VAL-262   THR-263  1.4 1.7 -3.6 1.5 64.2 62.2 35.0
 THR-263   ALA-264  4.2 4.6 -2.5 0.3 131.2 129.9 -25.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-277   GLN-278  3.1 3.4 -1.5 3.2 105.9 105.4 2.2
 GLN-278   VAL-279  0.8 0.5 -1.0 -0.8 91.5 90.0 26.0
 VAL-279   GLY-280  3.6 3.6 0.0 6.9 103.0 102.9 44.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-288   ASP-289  6.7 6.8 4.1 1.3 47.4 49.7 58.6
 ASP-289   MET-290  5.3 5.3 -2.5 -3.6 70.0 66.3 50.8
 MET-290   VAL-291  1.7 1.6 -2.5 2.7 123.2 124.7 -6.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees