Glycerol Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-262   LYS-263  5.6 6.0 3.0 -24.4 150.3 152.2 68.6
 LYS-263   ASN-264  3.8 3.7 23.7 -3.9 78.7 79.9 75.4
 ASN-264   THR-265  1.0 1.0 9.6 10.1 140.1 144.4 -59.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-270   PHE-271  7.3 7.4 -36.8 2.9 39.1 43.0 113.7
 PHE-271   LEU-272  5.8 5.8 -16.6 23.7 95.4 96.4 -1.8
 LEU-272   LEU-273  2.3 2.4 -15.8 8.7 47.6 49.6 19.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-304   GLU-305  4.4 4.6 -13.9 -0.6 40.3 45.5 48.0
 GLU-305   GLY-306  4.4 4.3 3.5 22.3 76.0 83.1 18.2
 GLY-306   SER-307  4.1 4.1 -34.1 24.2 40.1 55.9 32.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-346   VAL-347  19.9 20.5 1.5 -8.7 148.2 134.8 -7.6
 VAL-347   PRO-348  19.1 19.1 18.6 -4.2 84.3 83.2 -40.8
 PRO-348   ALA-349  17.4 17.8 -105.7 -34.2 30.5 41.5 458.1
 ALA-349   PHE-350  18.3 18.7 -72.2 -145.3 113.0 85.3 90.5
 ALA-349   PHE-350  18.3 18.7 -72.2 -145.3 113.0 85.3 90.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-349   PHE-350  18.3 18.7 -72.2 -145.3 113.0 85.3 90.5
 ALA-349   PHE-350  18.3 18.7 -72.2 -145.3 113.0 85.3 90.5
 PHE-350   SER-351  15.6 20.7 -39.3 -56.0 83.9 129.6 -155.1
 SER-351   GLY-352  14.2 19.7 64.9 157.8 28.4 34.6 797.1
 GLY-352   LEU-353  14.7 18.5 135.3 -44.0 60.1 104.6 -90.5
 LEU-353   PHE-354  11.1 15.1 4.6 -165.7 26.2 82.8 -415.4
 PHE-354   ALA-355  10.4 12.1 -67.1 11.9 118.0 98.3 -93.6
 ALA-355   PRO-356  13.2 8.6 -9.8 3.4 70.2 73.6 4.9
 PRO-356   TYR-357  15.3 8.2 -1.9 36.8 121.4 129.4 104.3
 TYR-357   TRP-358  14.8 11.9 -27.1 -9.8 81.5 115.9 -21.9
 TRP-358   ARG-359  11.9 12.8 31.5 2.0 93.7 66.1 44.8
 ARG-359   PRO-360  14.8 16.4 -2.9 9.0 23.6 61.8 -4.6
 PRO-360   ASP-361  15.3 18.8 -141.6 9.8 90.0 84.6 73.3
 ASP-361   ALA-362  19.0 21.5 -166.6 16.7 16.3 49.2 633.8
 ALA-362   ARG-363  20.9 20.8 159.1 -35.1 117.4 140.3 -325.3
 ARG-363   GLY-364  22.8 22.7 33.6 61.5 107.6 141.2 -253.8
 GLY-364   ALA-365  21.7 22.3 -40.6 10.0 74.2 88.7 49.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-438   GLU-439  7.1 7.1 -2.8 13.6 49.2 58.2 -11.3
 GLU-439   THR-440  10.5 10.6 -23.9 13.6 47.6 40.8 5.4
 THR-440   THR-441  10.0 10.0 -1.6 -10.9 48.9 43.3 36.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-466   ALA-467  14.8 12.1 -38.9 -9.9 52.2 60.0 146.9
 ALA-467   GLU-468  12.5 11.3 -25.9 26.0 103.1 94.5 64.3
 GLU-468   ASP-469  9.5 8.8 -16.0 -17.5 33.0 25.2 118.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-497   TRP-498  23.7 22.6 92.8 -18.4 77.9 66.6 91.4
 TRP-498   VAL-499  26.6 25.3 -8.6 -4.9 82.9 66.3 8.6
 VAL-499   ASP-500  24.9 26.1 171.0 -15.8 160.0 171.5 -612.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees