Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  3.1 3.1 -0.8 -5.9 46.0 44.0 20.7
 LEU-109   GLY-110  0.5 0.4 1.6 11.1 58.7 61.5 32.2
 GLY-110   ILE-111  4.1 4.1 -18.1 8.4 43.5 45.3 30.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-214   LEU-215  8.0 8.2 5.3 5.4 135.7 138.8 -30.9
 LEU-215   ASP-216  9.6 9.8 -0.9 -0.3 41.0 35.5 7.4
 ASP-216   SER-217  6.7 6.9 -6.9 3.8 98.5 97.7 -7.4
 SER-217   LYS-218  2.9 3.2 -11.0 -16.7 85.5 74.4 46.0
 LYS-218   GLY-219  3.3 2.8 12.4 3.3 72.8 54.3 30.5
 GLY-219   TYR-220  4.5 4.5 18.2 -3.7 60.9 66.5 23.7
 TYR-220   GLY-221  7.5 7.6 0.2 3.5 120.8 119.3 -9.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees