Glutamate Receptor 2, Linker, Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-107   ILE-108  3.6 3.8 17.0 -9.2 40.4 39.0 71.2
 ILE-108   SER-109  6.8 6.5 5.4 -4.1 64.8 66.8 -132.4
 SER-109   ILE-110  6.6 6.4 20.7 -12.5 37.8 36.8 52.9
 ILE-110   MET-111  8.8 8.4 8.0 -6.4 29.1 28.0 60.6
 MET-111   ILE-112  7.9 7.6 -3.8 -24.9 125.1 123.0 -153.4
 ILE-112   LYS-113  10.1 9.9 16.8 -9.3 24.1 37.9 170.4
 LYS-113   LYS-114  10.1 10.3 11.6 -20.3 91.6 103.4 -3.7
 LYS-114   GLY-115  10.4 10.9 34.0 -21.5 72.3 65.2 62.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-177   VAL-178  13.9 14.5 -1.0 -5.7 96.7 94.0 -19.9
 VAL-178   ARG-179  11.7 11.9 4.2 -3.9 154.2 153.6 14.3
 ARG-179   LYS-180  10.0 10.6 -4.0 -7.9 43.3 48.3 78.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-185   ALA-186  16.0 15.7 10.3 1.8 117.4 118.7 -49.2
 ALA-186   TYR-187  13.5 13.3 -8.6 8.1 58.6 59.1 3.2
 TYR-187   LEU-188  11.7 11.7 4.9 -4.1 149.0 147.8 14.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-189   GLU-190  8.7 8.9 3.9 12.3 56.9 64.3 56.5
 GLU-190   SER-191  6.2 6.7 -11.5 1.7 60.7 61.5 30.7
 SER-191   THR-192  2.5 2.9 -1.6 -4.4 58.3 57.3 60.9
 THR-192   MET-193  3.9 4.1 12.1 -0.7 163.3 161.3 -109.6
 MET-193   ASN-194  5.1 5.3 -0.6 -4.6 59.8 60.9 27.0
 ASN-194   GLU-195  2.9 2.8 5.8 2.4 113.2 109.1 -25.5
 ASN-194   GLU-195  2.9 2.8 5.8 2.4 113.2 109.1 -25.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-194   GLU-195  2.9 2.8 5.8 2.4 113.2 109.1 -25.5
 ASN-194   GLU-195  2.9 2.8 5.8 2.4 113.2 109.1 -25.5
 GLU-195   TYR-196  1.1 1.3 -3.8 -2.1 40.7 35.8 39.1
 TYR-196   ILE-197  3.7 3.9 7.6 -4.7 149.7 147.6 -20.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-198   GLN-199  1.2 1.4 2.3 24.4 53.6 66.1 128.7
 GLN-199   ARG-200  3.4 3.5 -32.9 4.8 143.0 160.7 -236.3
 ARG-200   LYS-201  2.8 2.5 -155.7 -69.4 137.3 125.2 868.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-203   ASP-204  2.7 4.7 -55.3 27.9 96.3 92.9 -47.7
 ASP-204   THR-205  5.6 6.6 -16.6 3.9 154.2 153.6 -70.6
 THR-205   MET-206  5.7 6.1 -11.0 0.6 129.4 136.3 -97.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-208   GLY-209  9.1 9.5 -23.7 -16.7 16.4 7.4 348.8
 GLY-209   GLY-210  10.2 9.8 14.2 -22.5 129.7 108.8 -17.1
 GLY-210   ASN-211  8.4 7.0 50.3 -15.3 90.8 105.8 -105.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-212   ASP-213  8.2 7.6 -7.7 7.0 148.4 148.5 -6.0
 ASP-213   SER-214  6.0 6.0 3.1 -2.4 94.9 90.3 47.4
 SER-214   LYS-215  2.7 3.2 9.5 -5.1 72.0 77.3 48.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees