Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-106   MET-107  4.6 4.7 2.6 -0.2 97.8 100.0 8.7
 MET-107   SER-108  2.9 3.1 -1.5 -6.0 9.4 9.3 158.0
 SER-108   LEU-109  4.4 4.7 -8.7 4.8 73.5 73.1 -0.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  4.8 4.8 4.2 -8.4 157.3 155.9 69.2
 SER-217   LYS-218  5.1 5.0 21.3 -27.6 103.4 103.7 10.4
 LYS-218   GLY-219  2.8 3.1 1.5 -0.2 176.7 177.1 -12.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-249   LEU-250  7.3 7.3 2.7 -1.4 96.0 96.9 -3.8
 LEU-250   LYS-251  4.3 4.4 -1.4 -3.8 43.5 47.4 12.2
 LYS-251   ASN-252  6.2 6.4 2.6 12.4 73.2 65.9 117.8
 ASN-252   LYS-253  9.6 9.7 -11.1 2.5 133.2 127.9 -131.9
 LYS-253   TRP-254  8.4 8.5 -0.8 -0.2 67.4 64.9 19.4
 TRP-254   TRP-255  8.6 8.8 6.7 -5.4 137.0 135.9 9.1
 TRP-255   TYR-256  10.7 10.9 -9.6 10.7 74.0 71.2 -111.4
 TRP-255   TYR-256  10.7 10.9 -9.6 10.7 74.0 71.2 -111.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-255   TYR-256  10.7 10.9 -9.6 10.7 74.0 71.2 -111.4
 TRP-255   TYR-256  10.7 10.9 -9.6 10.7 74.0 71.2 -111.4
 TYR-256   ASP-257  13.5 13.6 -8.7 7.6 18.8 18.3 -26.1
 ASP-257   LYS-258  13.6 13.4 -16.2 3.0 84.5 83.6 71.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees