Nicotinamide Phosphoribosyltransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-241   VAL-242  11.2 11.2 -4.5 7.3 103.2 102.0 4.1
 VAL-242   PRO-243  7.7 7.7 0.0 5.9 149.5 152.3 52.3
 PRO-243   ALA-244  5.8 5.9 2.1 -19.1 99.9 96.9 4.4
 ALA-244   ALA-245  5.5 5.3 4.5 21.4 29.7 25.3 211.3
 ALA-245   GLU-246  5.1 5.4 37.6 -21.3 92.9 87.5 -88.6
 GLU-246   HIS-247  8.7 8.8 -9.4 2.6 131.2 124.0 -115.0
 HIS-247   SER-248  10.9 10.7 14.3 -7.8 18.1 23.3 85.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-308   ILE-309  2.6 2.8 7.4 -11.2 69.8 63.1 8.3
 ILE-309   ILE-310  3.6 3.8 -8.4 21.1 56.1 51.6 -53.8
 ILE-310   ARG-311  7.1 7.2 9.6 -19.1 85.0 88.3 -79.9
 ARG-311   PRO-312  9.7 9.5 -17.9 -12.2 79.3 69.0 -23.2
 PRO-312   ASP-313  13.2 13.2 -2.3 -87.7 44.0 71.4 520.7
 ASP-313   SER-314  16.3 15.3 -154.0 -74.9 104.0 74.1 125.3
 SER-314   GLY-315  19.0 18.8 -6.3 -31.6 122.2 133.3 -207.7
 GLY-315   ASN-316  22.2 21.6 -21.3 -6.9 151.9 145.3 -230.9
 ASN-316   PRO-317  22.8 22.7 -2.2 11.9 107.4 114.6 35.8
 ASP-319   THR-320  20.9 21.2 -0.5 -1.5 56.0 58.8 -2.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees