Ribokinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-13   ASN-14  6.8 6.7 2.6 -2.4 71.0 76.4 6.7
 ASN-14   ALA-15  4.1 3.8 5.0 7.4 23.7 26.1 58.7
 ALA-15   ASP-16  4.7 4.2 -3.8 5.8 112.4 112.3 -18.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-37   VAL-38  2.5 2.7 8.7 -2.1 14.7 15.5 2.8
 VAL-38   ALA-39  4.4 4.4 -1.2 -5.1 96.3 93.0 34.4
 ALA-39   PHE-40  5.0 4.8 25.2 -9.9 9.4 16.1 80.6
 PHE-40   GLY-41  6.7 6.4 10.4 -18.7 72.0 79.4 -31.9
 GLY-41   GLY-42  5.5 5.4 0.1 8.1 8.2 8.3 56.6
 GLY-42   LYS-43  5.5 5.5 10.1 -9.1 83.0 87.1 -30.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-96   VAL-97  4.5 3.8 8.1 11.6 16.9 19.2 111.0
 VAL-97   ALA-98  3.6 3.3 1.4 0.8 82.9 80.7 -50.5
 ALA-98   LEU-99  2.3 2.4 15.8 -12.6 33.5 39.6 27.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-113   ALA-114  4.5 4.1 1.7 9.9 64.0 69.6 73.0
 ALA-114   GLY-115  2.2 1.9 -6.3 6.8 89.5 82.1 44.6
 GLY-115   ALA-116  5.6 5.4 0.9 -16.4 52.4 48.2 -37.9
 ALA-116   ASN-117  7.2 6.8 13.0 -5.1 70.3 78.8 30.0
 ASN-117   ALA-118  4.8 4.7 2.6 6.3 22.0 17.8 23.8
 ALA-118   ALA-119  3.1 3.2 -5.4 -1.5 134.1 127.6 -7.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees