Polymerase (Dna Directed) Kappa
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-39
ILE-40
9.4
9.8
-14.0
14.8
77.6
78.9
-37.5
ILE-40
MET-41
6.3
6.5
17.4
-11.0
45.7
37.4
59.3
MET-41
GLU-42
6.6
6.5
-8.2
8.6
152.5
142.5
-21.0
GLU-42
ALA-43
6.4
6.5
9.3
0.6
89.3
101.0
19.6
ALA-43
THR-44
4.1
4.5
-34.0
19.5
77.7
89.0
0.5
THR-44
LYS-45
1.7
1.6
23.9
-36.8
39.4
33.8
-58.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
MET-108
ASP-109
5.3
6.0
-4.7
12.8
31.7
32.4
-84.0
ASP-109
ALA-110
7.6
8.5
8.6
-13.1
136.1
136.9
32.8
ALA-110
PHE-111
7.5
8.3
5.6
-11.5
71.0
78.1
58.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-181
LYS-182
8.4
8.1
-12.4
-1.9
57.1
51.7
49.1
LYS-182
GLU-183
7.1
7.0
-10.0
3.5
17.4
18.3
68.9
GLU-183
ILE-184
9.0
9.1
14.1
-9.6
117.8
120.9
-42.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees