Acylamino-Acid-Releasing Enzyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-14   ASP-15  2.4 2.4 1.6 -2.8 18.4 17.0 8.3
 ASP-15   VAL-16  3.3 3.5 -2.1 1.3 119.1 121.1 5.9
 VAL-16   GLU-17  3.8 2.5 0.0 2.0 80.6 77.8 2.3
 GLU-17   ARG-18  2.9 1.8 10.8 -9.8 60.8 63.6 -3.6
 ARG-18   LEU-19  2.1 2.9 6.4 -8.4 9.4 9.1 -1.8
 LEU-19   ILE-20  1.1 1.6 6.7 -2.5 77.7 80.3 -13.4
 ILE-20   ALA-21  4.8 4.1 7.6 -16.6 99.5 98.0 7.8
 ALA-21   VAL-22  6.2 6.4 13.0 -11.9 52.5 53.9 36.3
 VAL-22   GLU-23  6.5 7.0 1.9 -8.3 58.5 55.7 -38.9
 GLU-23   LYS-24  9.7 10.2 2.1 4.2 14.8 15.7 35.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-318   GLU-319  16.1 16.6 -6.6 -2.2 83.9 90.7 75.8
 GLU-319   GLY-320  12.7 13.3 -19.1 18.6 162.4 162.3 -13.6
 GLY-320   GLY-321  10.4 11.2 2.7 7.2 88.0 69.8 45.7
 GLY-321   LEU-322  10.0 11.1 -25.6 1.4 116.4 111.2 -33.0
 LEU-322   PRO-323  7.5 8.6 -0.5 18.4 118.0 119.2 19.2
 PRO-323   GLU-324  9.3 10.3 -9.9 2.4 65.7 55.0 29.4
 GLU-324   ASP-325  11.7 13.1 6.1 -23.3 83.9 97.6 8.2
 ASP-325   LEU-326  10.5 12.3 2.6 8.8 129.3 119.7 -25.1
 LEU-326   ARG-327  7.4 8.8 -0.5 -0.6 14.5 15.9 9.6
 ARG-327   ARG-328  8.8 10.0 -0.5 5.5 76.1 67.0 -10.0
 ARG-328   SER-329  11.7 12.9 -14.6 -1.7 89.0 78.2 6.9
 SER-329   ILE-330  10.0 11.2 -3.5 -4.5 22.6 30.9 11.0
 ILE-330   ALA-331  9.4 9.0 -12.7 -12.4 63.7 42.1 43.5
 ALA-331   GLY-332  12.9 11.7 -125.6 113.5 18.4 27.9 17.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-375   ASP-376  3.4 3.2 -5.4 -7.6 53.6 49.1 37.5
 ASP-376   SER-377  1.7 2.2 5.7 -1.1 114.9 118.4 -0.5
 SER-377   TRP-378  1.3 0.8 4.1 -1.1 161.4 162.7 -20.2
 TRP-378   ASP-379  1.4 1.1 -11.2 4.8 79.0 75.5 -0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-549   ILE-550  20.5 20.3 -14.2 8.3 116.1 117.3 -6.5
 ILE-550   ILE-551  21.8 22.2 -8.4 -34.5 65.2 61.9 52.2
 ILE-551   PRO-552  19.7 20.4 18.7 3.3 93.0 62.4 41.3
 PRO-552   ASP-553  21.7 21.8 4.3 10.0 61.4 61.5 32.0
 ASP-553   ALA-554  22.8 20.5 20.7 14.5 42.5 72.1 78.9
 ALA-557   ILE-558  17.2 14.3 35.2 -37.6 157.1 133.8 8.3
 ILE-558   ASN-559  15.1 10.8 -14.7 0.4 89.5 90.6 13.9
 ASN-559   THR-560  15.3 10.1 -50.1 43.3 27.4 23.1 2.2
 THR-560   MET-561  13.9 10.1 20.5 -16.7 105.7 113.5 22.3
 MET-561   GLU-562  10.4 7.9 8.6 4.2 119.1 106.3 -14.0
 GLU-562   ASP-563  12.0 11.3 1.0 3.8 57.7 41.1 16.1
 ASP-563   ALA-564  14.0 11.9 -8.4 7.1 121.2 94.2 -13.2
 ALA-564   VAL-565  10.9 8.9 -5.6 5.8 57.3 48.8 -0.9
 VAL-565   LYS-566  9.5 10.2 2.9 -5.8 98.1 77.4 -4.3
 LYS-566   ILE-567  13.1 13.8 -3.0 -41.9 142.9 137.7 -71.1
 ILE-567   LEU-568  13.8 13.5 10.6 -6.7 76.3 71.9 -13.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees