Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-119   ILE-120  4.0 3.8 21.2 -13.4 120.4 115.9 -279.1
 ILE-120   VAL-121  3.3 3.3 -5.2 -3.5 39.2 36.6 192.3
 VAL-121   GLY-122  6.1 6.1 7.2 -7.7 145.7 146.2 -66.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-154   THR-155  6.2 6.3 -0.1 -9.9 21.5 14.7 208.9
 THR-155   ARG-156  6.5 6.6 -5.0 15.1 60.1 57.3 -337.2
 ARG-156   LYS-157  8.6 8.7 -2.3 0.6 76.3 80.2 131.1
 LYS-157   ASP-158  11.9 11.9 -7.5 13.1 23.2 27.2 -98.6
 ASP-158   ASP-159  11.2 11.1 -3.7 8.8 79.3 80.1 12.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees