Periplasmic Oligopeptide-Binding Protein
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLN-44
SER-45
7.8
7.7
-1.8
-2.9
53.2
55.5
200.6
SER-45
PHE-46
8.2
8.1
-4.8
2.9
71.0
72.4
-250.9
PHE-46
ASP-47
7.6
7.7
-5.5
-1.5
6.7
6.3
403.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-53
VAL-54
4.4
4.3
5.3
2.9
92.0
93.9
-49.2
VAL-54
PRO-55
3.4
3.5
-1.6
1.9
68.4
70.2
-4.7
PRO-55
GLU-56
0.5
0.6
-3.6
2.3
139.5
139.7
8.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-64
GLU-65
9.1
9.2
-2.4
6.3
76.8
78.0
72.0
GLU-65
GLY-66
9.2
9.4
6.2
-8.4
156.0
153.4
56.9
GLY-66
LEU-67
7.3
7.5
-3.6
5.2
51.9
53.1
81.6
LEU-67
VAL-68
8.9
9.0
-9.8
11.2
68.9
66.6
-8.4
LEU-67
VAL-68
8.9
9.0
-9.8
11.2
68.9
66.6
-8.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-67
VAL-68
8.9
9.0
-9.8
11.2
68.9
66.6
-8.4
LEU-67
VAL-68
8.9
9.0
-9.8
11.2
68.9
66.6
-8.4
VAL-68
THR-69
11.2
11.2
-7.0
2.1
9.1
9.5
80.2
THR-69
SER-70
12.0
12.0
-0.9
-1.0
70.4
67.8
153.1
SER-70
ASP-71
14.5
14.4
-2.7
4.0
47.4
49.1
-56.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-74
LYS-75
16.3
16.4
14.3
-8.6
164.0
160.6
-183.4
LYS-75
LEU-76
18.3
18.4
0.2
3.0
123.9
124.5
-73.7
LEU-76
GLN-77
16.3
16.3
3.3
-2.8
111.3
110.9
151.0
GLN-77
PRO-78
16.9
16.9
-6.5
4.8
62.1
59.2
86.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-101
LYS-102
17.8
17.7
-3.4
2.6
83.7
87.4
126.5
LYS-102
TRP-103
17.9
17.8
9.9
-11.2
142.6
142.4
-84.7
TRP-103
SER-104
16.2
16.4
-5.9
0.8
49.0
51.6
79.5
SER-104
ASN-105
18.1
18.2
8.2
-13.2
83.6
79.7
-14.1
ASN-105
GLY-106
20.3
20.5
0.8
9.2
34.8
35.3
244.6
GLY-106
ASP-107
21.2
21.4
-11.2
6.1
152.4
151.1
-230.9
ASP-107
PRO-108
19.0
19.0
-5.1
-3.0
109.2
105.3
-101.4
PRO-108
VAL-109
17.2
17.2
4.5
-4.2
103.4
99.8
39.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-129
TYR-130
10.0
10.0
2.4
-4.9
57.2
61.0
-149.6
TYR-130
ALA-131
7.8
7.8
11.5
-7.9
11.1
9.6
140.4
ALA-131
SER-132
9.1
9.1
-1.4
7.4
119.6
118.5
39.8
SER-132
TYR-133
10.7
10.7
-8.2
1.2
79.8
77.4
10.8
SER-132
TYR-133
10.7
10.7
-8.2
1.2
79.8
77.4
10.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-132
TYR-133
10.7
10.7
-8.2
1.2
79.8
77.4
10.8
SER-132
TYR-133
10.7
10.7
-8.2
1.2
79.8
77.4
10.8
TYR-133
LEU-134
8.1
8.0
-2.6
-0.7
19.8
14.3
173.2
LEU-134
SER-135
7.3
7.2
5.6
-4.3
120.8
119.4
-149.1
SER-135
TYR-136
11.0
10.9
2.6
-6.0
75.1
78.8
161.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-185
LEU-186
1.2
1.3
4.1
-1.2
93.0
93.0
212.3
LEU-186
PRO-187
3.9
4.0
-0.9
3.1
130.2
129.1
-27.5
PRO-187
LEU-188
6.0
6.3
-10.9
7.3
55.6
55.4
90.7
LEU-188
PRO-189
8.7
8.7
-2.6
4.4
124.8
126.5
-81.8
PRO-189
GLN-190
12.3
12.3
1.9
-7.9
65.7
59.5
162.4
GLN-190
LYS-191
12.7
12.5
5.8
-6.5
90.1
91.3
-133.4
LYS-191
VAL-192
16.5
16.3
9.3
-9.3
150.7
148.3
-98.7
VAL-192
VAL-193
16.8
16.7
6.5
-10.2
102.0
100.9
87.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-387
ASN-388
13.2
13.2
0.3
-3.8
80.9
81.0
-85.8
ASN-388
THR-389
9.7
9.7
5.1
-6.7
26.9
26.4
10.9
THR-389
ASN-390
8.2
8.1
-1.0
7.5
91.9
90.2
0.5
ASN-390
GLU-391
6.9
7.0
-2.1
8.1
129.1
132.2
0.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-418
GLN-419
13.3
13.2
-2.9
1.4
64.9
66.0
48.1
GLN-419
GLU-420
12.4
12.3
-6.7
7.3
75.0
75.2
-26.5
GLU-420
TRP-421
9.6
9.4
-1.6
-2.1
19.8
19.6
24.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-422
THR-423
9.6
9.5
-6.1
5.9
88.4
90.5
78.6
THR-423
TYR-424
12.9
12.8
-6.6
5.6
100.3
100.6
-36.0
TYR-424
ILE-425
12.4
12.3
-1.7
0.0
167.8
167.2
-70.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees