Virb11 Homolog

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-131   ILE-132  36.4 36.4 -19.8 16.0 117.3 113.1 -24.2
 ILE-132   ARG-133  33.2 33.3 -0.4 4.9 78.0 79.1 24.9
 ARG-133   ILE-134  29.8 30.0 -9.4 14.6 90.3 83.8 -25.0
 ILE-134   PRO-135  26.8 27.1 -18.4 1.8 108.1 111.2 -20.9
 PRO-135   SER-136  23.5 23.9 -118.7 87.3 47.5 49.8 115.7
 SER-136   LYS-137  20.3 22.0 -86.6 99.9 99.6 113.2 -87.8
 LYS-137   THR-138  17.6 20.3 102.1 -70.7 131.0 122.4 -150.8
 THR-138   THR-139  15.4 16.6 14.1 -5.8 74.4 59.1 57.9
 THR-139   TYR-140  12.5 13.2 -45.8 12.1 34.2 52.4 182.9
 TYR-140   PRO-141  11.5 11.3 15.1 -6.1 72.0 61.8 2.5
 PRO-141   HIS-142  8.0 7.9 4.2 -1.7 96.1 94.1 -1.4
 HIS-142   SER-143  9.0 8.8 2.7 -10.2 156.6 150.7 53.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-202   SER-203  12.7 12.9 6.2 -4.2 61.1 52.4 18.5
 SER-203   ILE-204  15.6 15.6 -28.3 26.1 65.6 70.2 4.6
 ILE-204   GLU-205  19.3 19.2 7.5 4.9 41.3 36.2 88.2
 GLU-205   ASP-206  21.8 21.6 5.4 11.3 105.7 101.6 37.6
 ASP-206   THR-207  25.4 25.3 -26.1 -3.8 137.0 115.6 -154.1
 THR-207   GLU-208  24.8 24.8 23.1 2.8 74.6 76.5 8.0
 GLU-208   GLU-209  21.8 21.8 34.6 -36.1 24.4 23.6 -9.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees