Sialyltransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-220   SER-221  7.3 7.3 35.3 -75.7 148.4 150.7 104.4
 SER-221   ASP-222  5.3 5.8 23.8 12.7 84.4 86.1 23.2
 ASP-222   GLU-223  5.3 5.2 7.4 -12.7 79.3 74.6 -29.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-303   ILE-304  6.6 6.8 -12.5 10.1 100.0 102.9 11.7
 ILE-304   PRO-305  3.8 3.7 -17.0 22.5 100.6 95.1 32.1
 PRO-305   ALA-306  6.1 6.4 -35.6 -2.3 54.3 43.6 94.1
 ALA-306   ASN-307  9.0 8.8 8.3 -6.2 85.1 89.6 -16.5
 ASN-307   ILE-308  9.0 10.4 14.1 7.4 122.3 99.7 -32.5
 ILE-308   SER-309  6.3 7.8 -6.7 52.0 17.5 8.8 -155.9
 SER-309   PHE-310  7.3 8.8 -38.2 9.3 58.0 70.6 14.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-343   PHE-344  9.2 8.5 14.7 -5.6 86.4 91.4 -25.5
 PHE-344   THR-345  11.5 11.0 38.7 -48.6 84.4 79.7 -0.9
 THR-345   SER-346  14.9 14.7 2.3 -79.6 124.6 128.6 188.7
 SER-346   ASN-347  17.9 17.5 24.1 57.1 61.0 81.8 93.8
 ASN-347   LYS-348  19.4 21.3 130.7 -0.4 141.1 147.0 -441.6
 LYS-348   LYS-349  21.9 21.5 169.3 20.8 140.7 85.8 658.1
 LYS-349   ILE-350  19.2 21.0 163.2 23.1 116.7 130.8 -308.2
 ILE-350   LYS-351  16.8 17.5 2.2 13.1 86.7 113.5 -66.5
 LYS-351   ASN-352  18.4 18.3 -14.6 4.3 70.7 61.9 1.9
 ASN-352   LYS-353  15.5 15.1 0.9 0.3 92.6 84.4 10.0
 LYS-353   GLU-354  11.8 11.4 4.3 -17.0 128.1 106.0 -7.2
 GLU-354   ASP-355  11.8 12.6 12.4 0.9 60.0 47.1 23.7
 ASP-355   ALA-356  13.7 15.2 -1.9 -5.3 133.7 132.1 -23.1
 ALA-356   LEU-357  11.0 12.2 -4.5 7.1 68.8 79.4 -16.9
 LEU-357   ASN-358  8.6 10.8 -1.3 4.5 73.8 93.5 -10.3
 ASN-358   ASP-359  11.7 14.4 4.1 -18.1 36.6 16.2 -34.7
 ASP-359   PRO-360  12.5 14.3 -11.1 -16.0 86.8 102.6 -22.8
 PRO-360   TYR-361  13.5 14.6 26.2 -2.8 64.7 47.1 27.4
 TYR-361   VAL-362  11.2 12.3 -30.9 31.6 69.9 64.2 -9.8
 VAL-362   ARG-363  8.2 9.5 -1.9 -9.9 31.3 55.4 23.5
 ARG-363   VAL-364  9.1 10.5 0.9 13.7 78.6 58.1 -2.8
 VAL-364   MET-365  10.2 11.0 -10.5 -2.3 108.4 98.9 -8.4
 MET-365   LEU-366  7.2 7.3 4.1 1.2 138.2 144.0 0.8
 LEU-366   ARG-367  5.1 6.3 6.0 -5.1 123.8 104.1 -14.4
 ARG-367   LEU-368  8.2 9.4 1.6 0.6 66.7 58.2 4.3
 LEU-368   GLY-369  9.5 9.1 -5.8 0.6 101.8 85.9 -13.3
 GLY-369   MET-370  6.8 5.9 -3.3 -4.9 164.8 147.1 -13.4
 MET-370   ILE-371  5.9 4.2 8.9 10.0 92.5 82.2 10.1
 MET-370   ILE-371  5.9 4.2 8.9 10.0 92.5 82.2 10.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-370   ILE-371  5.9 4.2 8.9 10.0 92.5 82.2 10.1
 MET-370   ILE-371  5.9 4.2 8.9 10.0 92.5 82.2 10.1
 ILE-371   ASP-372  2.4 1.5 -4.2 2.2 167.1 168.6 -9.6
 ASP-372   LYS-373  1.4 0.6 -2.9 -8.8 85.3 108.3 18.2
 LYS-373   SER-374  2.9 3.7 9.8 -19.3 113.8 89.8 -8.8
 SER-374   GLN-375  5.7 5.6 6.7 -22.5 165.9 145.7 34.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees