Orotidine 5'-Monophosphate Decarboxylase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-15   PRO-16  10.9 10.9 5.1 -0.7 100.9 108.5 73.5
 PRO-16   VAL-17  7.4 7.6 9.3 -8.7 54.5 58.5 -18.0
 VAL-17   VAL-18  7.3 7.6 -4.3 1.1 141.5 139.9 -57.5
 VAL-18   VAL-19  4.6 4.9 2.8 -8.2 114.6 112.4 1.1
 VAL-18   VAL-19  4.6 4.9 2.8 -8.2 114.6 112.4 1.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-18   VAL-19  4.6 4.9 2.8 -8.2 114.6 112.4 1.1
 VAL-18   VAL-19  4.6 4.9 2.8 -8.2 114.6 112.4 1.1
 VAL-19   ALA-20  6.6 6.8 2.9 -0.4 120.2 122.0 -54.7
 ALA-20   LEU-21  6.4 6.7 -3.1 1.3 23.0 21.5 64.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-186   VAL-187  1.9 1.7 -9.4 12.5 142.3 143.6 30.1
 VAL-187   THR-188  1.7 1.6 4.4 -15.1 98.2 98.4 -32.6
 THR-188   PRO-189  4.9 4.8 30.9 -10.9 47.0 46.4 69.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-236   ILE-237  18.8 19.0 -7.7 24.1 136.2 133.9 107.7
 ILE-237   ASN-238  15.5 15.6 -9.6 -9.0 105.5 118.4 -85.7
 ASN-238   ALA-239  14.9 15.5 0.0 13.5 54.7 60.9 43.2
 ALA-239   SER-240  18.3 19.1 -4.0 -0.8 160.1 157.5 -37.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees