Malyl-Coa Lyase/beta-Methylmalyl-Coa Lyase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-3   THR-4  33.3 31.9 76.5 -45.3 80.3 125.8 -97.8
 THR-4   LEU-5  30.8 28.4 50.8 57.7 116.9 51.5 7.3
 GLN-7   GLN-8  22.7 23.1 23.2 3.0 72.3 122.9 92.3
 GLN-8   ALA-9  18.9 21.6 -4.6 -13.7 90.2 76.1 -247.5
 ALA-9   THR-10  17.4 18.4 -32.8 -26.3 32.2 115.2 114.4
 THR-10   PRO-11  15.8 15.4 39.4 35.3 91.8 135.1 -210.3
 ARG-12   LEU-13  9.6 8.9 -5.5 12.5 103.3 127.1 -11.9
 LEU-13   HIS-14  5.9 5.3 18.1 -1.8 31.4 27.5 4.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-267   PHE-268  7.7 8.2 3.6 -2.8 110.1 117.3 -2.0
 PHE-268   THR-269  5.8 6.1 -7.5 -40.2 13.7 4.1 139.1
 THR-269   PRO-270  6.2 6.5 -7.4 7.8 88.0 78.2 -0.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees