Bovine Mitochondrial F1-Atpase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-129   GLN-130  18.6 17.8 32.4 -30.9 69.2 74.0 45.8
 GLN-130   GLU-131  15.8 15.3 56.7 -39.8 96.6 99.2 16.4
 GLU-131   ILE-132  15.1 14.7 57.1 -60.7 77.7 66.0 32.5
 ILE-132   LEU-133  13.1 13.1 5.3 -22.3 141.6 133.5 111.8
 LEU-133   VAL-134  11.5 11.7 -4.4 3.8 114.5 114.3 -48.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-149   GLY-150  8.6 8.8 -2.3 -17.7 46.5 50.6 76.7
 GLY-150   LYS-151  7.0 6.9 3.7 -1.7 82.4 81.4 -15.2
 LYS-151   ILE-152  4.0 4.0 -2.2 -4.6 38.0 31.9 38.5
 ILE-152   GLY-153  1.1 1.1 -7.5 1.8 83.9 84.9 21.9
 GLY-153   LEU-154  2.5 2.7 11.5 -11.0 107.8 110.7 -45.4
 LEU-154   PHE-155  5.0 5.1 21.7 -26.8 122.9 115.7 -74.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-171   ASN-172  14.1 14.4 -18.5 18.8 62.5 75.0 18.5
 ASN-172   VAL-173  14.3 14.8 -6.6 9.8 111.0 122.3 -30.2
 VAL-173   ALA-174  12.0 12.5 133.0 -112.2 18.8 22.9 195.1
 ALA-174   LYS-175  13.1 14.9 113.6 -93.8 88.2 100.7 27.0
 LYS-175   ALA-176  16.9 16.9 -90.0 66.9 71.0 102.0 -43.0
 ALA-176   HIS-177  16.9 17.3 -99.0 83.5 106.4 126.5 -31.4
 HIS-177   GLY-178  14.7 14.7 25.6 40.1 15.1 37.0 430.4
 GLY-178   GLY-179  14.0 13.8 -49.0 -176.4 102.0 81.1 -324.8
 GLY-179   TYR-180  10.3 11.9 -128.0 4.0 87.9 119.8 -388.6
 TYR-180   SER-181  8.1 8.6 -41.7 -12.1 46.1 48.8 221.5
 SER-181   VAL-182  5.9 6.2 -3.6 5.1 120.4 123.0 14.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-331   THR-332  3.6 3.5 3.1 -3.6 96.4 90.8 17.2
 THR-332   THR-333  0.8 0.7 22.4 -21.8 81.3 80.5 37.8
 THR-333   VAL-334  4.5 4.4 -3.4 -9.6 113.1 111.5 -7.8
 VAL-334   LEU-335  6.3 6.2 -5.3 4.6 90.0 99.6 22.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-352   SER-353  3.7 3.5 55.4 -47.5 35.4 24.8 32.3
 SER-353   THR-354  3.9 3.5 5.9 -0.9 101.9 97.7 23.9
 THR-354   SER-355  3.8 4.1 11.6 -1.6 33.1 30.0 50.4
 SER-355   ARG-356  6.3 6.6 -13.8 14.9 74.9 80.4 -11.2
 ARG-356   ILE-357  8.9 8.9 40.1 -90.1 86.6 87.6 -31.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees