Dpo4 Polymerase IV

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-235   PRO-236  6.8 6.3 -35.9 14.3 109.5 93.8 -348.0
 GLU-235   PRO-236  17.8 17.9 -35.9 14.3 127.4 103.4 -210.4
 PRO-236   ILE-237  20.8 21.4 -7.1 21.8 134.2 139.9 88.6
 GLU-235   PRO-236  6.8 6.3 -35.9 14.3 109.5 93.8 -348.0
 GLU-235   PRO-236  17.8 17.9 -35.9 14.3 127.4 103.4 -210.4
 PRO-236   ILE-237  20.8 21.4 -7.1 21.8 134.2 139.9 88.6
 ILE-237   ARG-238  22.2 22.3 21.9 -37.1 45.5 46.1 -153.0
 ARG-238   THR-239  23.2 23.1 -22.2 16.4 151.5 147.4 -104.9
 THR-239   ARG-240  23.5 22.4 -28.8 22.5 123.1 104.1 27.8
 ARG-240   VAL-241  20.7 19.8 -11.7 54.4 156.2 150.1 259.7
 VAL-241   ARG-242  20.9 20.8 -36.2 37.0 123.8 118.6 -6.9
 ARG-242   LYS-243  18.8 18.2 5.3 0.1 62.4 77.4 22.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-248   VAL-249  8.1 8.4 24.7 -27.6 111.3 108.4 22.3
 VAL-249   THR-250  9.4 8.8 2.8 -6.9 115.4 109.0 14.7
 THR-250   MET-251  8.8 8.0 11.8 -13.3 174.8 171.3 14.7
 MET-251   LYS-252  7.8 7.5 -22.4 1.7 73.6 77.6 16.4
 LYS-252   ARG-253  9.9 10.3 3.3 29.4 83.0 104.0 -15.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees