Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-531   PRO-532  8.0 8.2 4.6 -16.1 165.9 156.2 134.7
 PRO-532   PHE-533  6.5 6.4 2.1 -1.0 132.7 140.0 -94.7
 PHE-533   MET-534  8.0 7.8 4.1 -10.4 139.1 139.7 41.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-762   GLY-763  5.5 5.5 -102.7 146.0 84.3 121.4 29.5
 GLY-763   TYR-764  3.7 3.3 34.4 -2.6 99.4 93.8 32.8
 TYR-764   GLY-765  2.1 2.1 -10.2 7.9 62.5 58.0 2.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-796   LYS-797  9.5 9.0 -7.2 7.7 54.8 57.1 15.4
 LYS-797   TRP-798  9.5 9.7 10.2 -1.1 94.6 94.4 -53.6
 TRP-798   TRP-799  6.5 6.9 -5.3 7.7 77.5 74.7 -5.1
 TRP-799   ARG-800  4.0 4.0 23.7 -9.7 156.9 162.6 -123.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees