Lactoferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-329   ASN-330  6.1 5.8 -10.3 8.7 137.5 139.2 -28.8
 ASN-330   LEU-331  9.3 8.8 13.6 -7.9 45.5 53.6 24.4
 LEU-331   ARG-332  9.7 9.7 48.0 -48.7 47.7 40.5 70.6
 ARG-332   GLU-333  6.2 6.7 21.6 -11.2 57.6 64.0 154.3
 GLU-333   THR-334  6.1 7.6 -19.3 -3.4 124.4 113.8 -117.6
 THR-334   ALA-335  8.5 10.5 0.9 7.6 121.5 123.2 -74.8
 ALA-335   GLU-336  12.2 14.0 14.4 10.2 94.7 84.1 26.9
 GLU-336   GLU-337  12.7 13.6 -15.4 -5.5 63.0 55.1 137.4
 GLU-337   VAL-338  9.5 10.8 -21.5 25.4 9.7 13.9 -39.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-673   LYS-674  10.4 10.2 -24.3 23.9 120.1 116.3 22.2
 LYS-674   CYS-675  8.3 8.0 -26.9 31.3 100.9 91.7 7.1
 CYS-675   SER-676  11.3 11.1 1.8 -29.2 144.0 145.3 292.4
 SER-676   THR-677  11.2 10.6 -5.8 -6.3 127.7 131.7 -136.0
 SER-676   THR-677  11.2 10.6 -5.8 -6.3 127.7 131.7 -136.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-676   THR-677  11.2 10.6 -5.8 -6.3 127.7 131.7 -136.0
 SER-676   THR-677  11.2 10.6 -5.8 -6.3 127.7 131.7 -136.0
 THR-677   SER-678  8.8 8.0 25.2 12.0 20.6 23.4 412.6
 SER-678   PRO-679  9.0 8.7 26.2 -20.1 48.1 57.4 -34.3
 PRO-679   LEU-680  7.9 7.8 18.9 -20.0 63.4 59.4 -47.2
 LEU-680   LEU-681  6.3 6.1 21.9 -19.2 129.4 133.6 -0.5
 LEU-681   GLU-682  5.1 5.3 9.4 -10.5 99.3 106.0 21.3
 GLU-682   ALA-683  3.2 3.2 10.9 -5.8 37.8 43.2 41.3
 GLU-682   ALA-683  3.2 3.2 10.9 -5.8 37.8 43.2 41.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-682   ALA-683  3.2 3.2 10.9 -5.8 37.8 43.2 41.3
 GLU-682   ALA-683  3.2 3.2 10.9 -5.8 37.8 43.2 41.3
 ALA-683   CYS-684  2.3 2.0 -13.2 8.0 92.3 88.9 28.8
 CYS-684   ALA-685  2.1 2.3 6.9 -2.1 128.1 139.4 -40.2
 ALA-685   PHE-686  2.2 2.0 -9.2 -1.3 117.3 107.1 -80.7
 PHE-686   LEU-687  3.5 3.6 -19.8 14.6 138.8 138.4 -47.6
 LEU-687   THR-688  4.1 3.9 -41.6 69.1 75.2 72.2 -181.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees