Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-114   GLY-115  7.5 7.6 3.9 8.5 69.0 70.5 62.9
 GLY-115   PRO-116  4.5 4.8 -28.3 20.7 109.2 105.8 -1.5
 PRO-116   GLU-117  6.3 6.4 83.4 -67.2 35.7 29.1 101.8
 GLU-117   ILE-118  8.4 9.2 13.1 -17.0 84.3 81.1 34.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-212   ALA-213  11.2 9.8 25.1 -1.8 31.4 41.6 33.2
 ALA-213   ALA-214  12.4 11.4 3.9 -1.2 44.3 31.0 78.0
 ALA-214   VAL-215  12.1 11.8 -12.2 7.8 135.6 136.0 -60.8
 VAL-215   ASP-216  10.8 10.3 2.3 25.5 20.9 20.3 194.6
 ASP-216   LEU-217  11.8 11.7 -38.5 17.2 139.2 132.1 -162.1
 LEU-217   PRO-218  9.8 9.3 -6.5 15.6 118.8 128.3 21.7
 PRO-218   ALA-219  7.6 7.4 1.6 2.9 109.9 109.7 -5.3
 ALA-219   VAL-220  4.2 4.3 -12.8 12.0 127.7 100.2 4.8
 VAL-220   SER-221  3.1 2.6 31.9 -11.8 61.7 73.9 31.1
 SER-221   GLU-222  6.3 5.9 4.3 -3.8 25.4 29.3 5.3
 GLU-222   LYS-223  7.5 7.6 -8.7 7.4 83.3 89.0 5.3
 LYS-223   ASP-224  8.6 8.8 4.4 0.0 97.4 87.7 15.2
 ASP-224   ILE-225  5.3 5.5 -15.6 10.6 149.8 154.8 -6.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees