3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-139   THR-140  3.6 3.4 7.8 0.0 69.7 72.9 -28.7
 THR-140   LEU-141  1.4 1.5 -18.7 10.0 44.5 46.7 54.6
 LEU-141   LEU-142  3.2 3.1 -12.1 6.8 42.8 39.4 34.8
 LEU-142   ALA-143  5.0 4.9 -14.0 16.0 47.0 52.3 -1.8
 ALA-143   MET-144  3.4 3.5 7.0 -3.2 52.8 54.1 36.4
 ALA-143   MET-144  3.4 3.5 7.0 -3.2 52.8 54.1 36.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-143   MET-144  3.4 3.5 7.0 -3.2 52.8 54.1 36.4
 ALA-143   MET-144  3.4 3.5 7.0 -3.2 52.8 54.1 36.4
 MET-144   VAL-145  0.5 0.4 -4.2 -4.5 138.9 144.4 -60.8
 VAL-145   ASP-146  3.7 3.4 19.0 -13.4 58.7 62.5 67.3
 ASP-146   SER-147  5.0 4.9 -16.9 25.5 96.0 86.8 23.2
 SER-147   SER-148  6.3 6.4 9.6 -31.8 67.3 66.9 -71.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-182   LEU-183  3.8 4.1 -17.6 13.0 80.3 79.9 22.4
 LEU-183   PRO-184  1.4 1.4 1.6 4.8 49.8 51.9 26.4
 PRO-184   VAL-185  3.4 3.2 -13.0 3.7 62.9 64.6 31.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-252   VAL-253  4.7 4.5 -7.6 3.0 102.0 109.3 -13.6
 VAL-253   VAL-254  7.0 6.5 16.6 -13.4 82.8 82.4 27.0
 VAL-254   SER-255  5.8 4.9 4.0 -18.1 28.2 32.7 -92.1
 SER-255   ALA-256  3.6 2.3 18.1 -9.1 40.1 34.1 97.1
 ALA-256   ASP-257  6.3 5.0 38.8 -130.8 88.8 86.3 137.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees