Peroxisomal Targeting Signal 1 Receptor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  LEU-494   GLY-495  9.6 9.7 -6.6 2.4 89.6 86.3 -7.2  GLY-495   VAL-496  6.2 6.1 -1.5 8.5 80.9 85.2 12.1  VAL-496   LEU-497  8.1 7.4 -2.6 0.3 10.9 15.1 8.2  LEU-497   PHE-498  9.0 8.4 -17.0 19.6 59.6 60.8 -21.0  PHE-498   ASN-499  5.3 5.0 -13.9 10.3 97.6 99.4 39.7  ASN-499   LEU-500  5.8 4.4 -12.4 14.9 49.5 54.2 -16.8  LEU-500   SER-501  8.9 7.7 -10.4 18.9 22.5 19.8 -29.9 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  TYR-522   LEU-523  3.1 2.8 -11.0 17.2 37.1 39.5 -22.1  LEU-523   LEU-524  5.7 5.5 -4.8 -8.2 34.6 41.3 61.3  LEU-524   TRP-525  4.1 3.4 -0.9 10.4 81.5 85.1 -11.8 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  LEU-532   ALA-533  5.4 5.6 5.0 -12.4 78.6 72.2 -10.0  ALA-533   ASN-534  8.6 8.4 12.7 8.7 27.0 20.3 92.0  ASN-534   GLY-535  8.2 7.1 -2.2 -14.5 141.2 131.6 -67.4  GLY-535   ASN-536  6.6 7.0 10.6 -7.1 87.0 97.4 4.9  ASN-536   GLN-537  10.2 10.7 1.4 7.1 116.3 126.8 -21.2  GLN-537   SER-538  9.9 10.6 12.7 -18.9 155.6 150.7 37.7 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees