Fab 2G12, Light Chain

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-112   PRO-113  5.0 5.0 15.7 18.9 59.7 58.3 268.9
 PRO-113   SER-114  2.1 1.9 21.2 -39.4 124.5 128.7 13.8
 SER-114   VAL-115  2.4 2.0 -19.2 24.0 134.5 125.7 -29.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-136   ASN-137  1.5 1.5 62.4 -61.9 87.3 98.5 0.8
 ASN-137   ASN-138  3.1 3.0 -16.5 34.1 121.1 116.5 32.9
 ASN-138   PHE-139  5.5 5.6 5.2 -15.5 63.0 59.9 -105.3
 PHE-139   TYR-140  5.3 5.6 -28.3 24.0 104.7 116.2 -54.7
 PHE-139   TYR-140  5.3 5.6 -28.3 24.0 104.7 116.2 -54.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-139   TYR-140  5.3 5.6 -28.3 24.0 104.7 116.2 -54.7
 PHE-139   TYR-140  5.3 5.6 -28.3 24.0 104.7 116.2 -54.7
 TYR-140   PRO-141  8.6 9.1 3.8 16.7 125.6 122.8 157.8
 PRO-141   ARG-142  10.4 10.8 -1.2 -9.1 123.3 121.2 -52.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-160   GLU-161  9.1 9.3 34.3 -39.0 59.0 55.0 8.3
 GLU-161   SER-162  6.1 6.0 43.0 -44.6 124.1 124.5 64.1
 SER-162   VAL-163  2.6 2.3 14.3 -17.4 49.3 46.4 -49.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-172   TYR-173  9.2 9.2 -20.7 30.9 144.5 144.6 78.6
 TYR-173   SER-174  6.1 6.3 -9.4 10.9 75.0 69.9 -5.0
 SER-174   LEU-175  2.7 3.0 20.9 -31.1 54.6 50.4 -70.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-198   GLN-199  7.6 8.6 19.1 -24.1 49.5 42.2 -138.2
 GLN-199   GLY-200  10.4 11.2 18.0 8.5 34.9 42.0 301.4
 GLY-200   LEU-201  8.4 8.6 10.3 -27.3 46.4 49.3 -88.4
 LEU-201   SER-202  6.4 7.3 9.0 -7.6 55.3 58.9 -69.7
 SER-202   SER-203  8.6 9.6 -3.2 -17.9 95.3 85.4 -97.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees